Nicotiana tabacum (common tobacco): 107813402
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Entry
107813402 CDS
T04643
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107813402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107813402
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107813402
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107813402
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107813402
NCBI-ProteinID:
XP_016494158
UniProt:
A0A1S4BZA1
LinkDB
All DBs
Position
Un
AA seq
661 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDNTGRSFPSSFSPQSGAPSPLYHHSGSIQGLHNIHGSFNVPNM
HGALGSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPTALSQISQGNSHAHSGMTSRGGM
SVVGNPGYSSNTNGVGGSIPGILPTSAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVG
GGNIGRSISSGAGLSVPGLASRLNMNTNSGSGNLNVQGSNRLMSGVLQQASPQVMSMFGN
SYPPAGGPLSQNHIQAVGNLNSMGMLNDLNSNDGSPFDINDFPQLSSRPSSAGGPQGQLG
SLRKQIVQQNQEFSIQNEDFPALPGFKGGNADYGMDLHQKEQLHDNTLSMMQQQQFSMGR
SGGFNLGGTYSSLRTQQQQQQQHAPSVSNSGLSFSNVNNQDPLYLHGSDVFSSSHSSYHQ
QSGGPPGIGLRPLNSPSTVSGIGSYDQLIQQYQQHQSQSQFRLQQMSALGQPYRDQGMKS
MQAQATPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLHKAFGSPWSDEP
AKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGWF
YHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPLLPQ
H
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcttctctgaacggatcagcttcaaatcttcctgataacacc
ggccgctcatttccttcctctttctctcctcaatctggtgcaccctcccctctttatcat
cactcaggaagtatccaggggctgcataacattcatgggagtttcaacgttccaaacatg
cacggagcacttggttcaagaaacacggcaataaataacgtgccctccagtggtgtccag
caatctgggaataatctttctggtggtcgttttgtaccaaacaatcttcccactgccctt
tctcagatatcccaaggcaattcgcatgctcattctgggatgacgagtagaggtggtatg
agtgttgttggtaacccgggatatagcagtaacactaatggtgtagggggttctatccct
ggaattctcccaacctctgcagcaattggtaatcgaagttctgtgccaggccttggggtg
tcccccattttgggaaatgcaggcccaaggatgacaaactcagttggaaatatagttggt
gggggcaacattggcagaagcattagctctggtgcaggattgtctgtgcctggtcttgct
tcacggctaaatatgaacaccaactctggctctggaaatttaaatgttcaaggatctaat
aggctaatgagtggtgtcctccagcaagcctctccgcaggtaatgtctatgtttggtaat
tcatatcctcctgctggtggtccactatctcagaaccatatccaagcagtcggcaacctt
aattctatgggaatgctgaatgatctgaattcaaatgatgggtctccatttgatataaac
gatttccctcagctaagcagccgacctagttctgctggagggcctcaaggacaattgggt
tcactgcgaaaacaaattgttcaacaaaatcaggaattcagcattcaaaatgaagatttc
ccagccttgcctggatttaaaggtggcaatgctgattatggtatggatctacaccagaaa
gaacaactccatgataatactctttctatgatgcagcagcagcagttctctatgggcaga
tctggtggctttaacttgggagggacatactcatcacttcgcacacagcagcaacagcaa
cagcaacatgccccatcggtgagtaatagtggtctctctttttcaaatgttaacaaccag
gatccactatatttacatggttcagatgtcttctcgtcatcgcactccagttatcaccaa
cagtctggtggacctcctggtatcgggttacgacctcttaattctccaagtactgtttct
ggtattggctcatacgatcagcttatccagcagtatcaacaacatcagagtcaatcccaa
tttcgactgcagcaaatgtctgctttaggtcagccgtacagggatcagggcatgaaatcc
atgcaggcccaagctacccctgacccttttggtatgcttggtttactaagtgtaataagg
atgagcgatccggatctgacttctcttgcacttggaattgatctaactactcttggattg
aatttgaactctgccgaaaatttacacaaggcatttggttccccatggtctgatgagcct
gccaagggtgatccagaatttactgtaccgcaatgttattatgccaagcaaccacctcct
ctaaatcaagcatacttctccaagtttcagttagacactttgttttacattttctacagc
atgccaaaggatgaagcccaattatatgctgctaatgaattgtataatcggggctggttt
taccacagagaacatcgattatggtttatgagggtcgccaacatggagcctcttgtcaag
accaacgcctatgagagaggatcttatatatgttttgatccaaacacatgggaaacaatc
cgcaaggataattttgtgctccactatgagatgttggaaaaaagacctcttctacctcag
cactaa
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