Nicotiana tabacum (common tobacco): 107813637
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Entry
107813637 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107813637
09122 Translation
03013 Nucleocytoplasmic transport
107813637
03015 mRNA surveillance pathway
107813637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107813637
03041 Spliceosome [BR:
nta03041
]
107813637
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107813637
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107813637
Spliceosome [BR:
nta03041
]
Complex C
Other components
EJC/TREX
107813637
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107813637
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107813637
NCBI-ProteinID:
XP_016494404
UniProt:
A0A1S4C023
LinkDB
All DBs
Position
Un
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKAPDLVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQVEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLS
LARDKDLSLRNVRHFVLDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLDKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagagaacaaggagaacgatgcttacgaggaagagcttctcgactacgaagaagat
gatgagaaggcccccgatttagtcaacggaaaagttaacggcgagtccgccaagaagggt
tatgttggaattcacagctccggattcagagactttcttttaaagccagagctactgagg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgtattccacaa
gctattctgggtatggatgttatttgtcaagccaaatctggaatgggcaaaacggctgtt
tttgttctttcgactctgcaacaagttgaacctgttgctggtcaggttgctgccttggtt
ctatgtcatacaagggaattagcttatcagatctgtcatgaattcgaacggttcagcaca
tatttgcccgatatcaaggttgctgttttctatggtggtgtaaacatcaaacttcacaag
gagcttctgaagaatgaatgccctcacattgttgttggaactcctgggagagtactttca
ttggctagagataaggacctatctctgaggaatgtgaggcattttgttctggatgaatgc
gataagatgcttgaatcacttgacatgaggagagatgtgcaggaaattttcaagatgact
ccccatgacaagcaagtaatgatgttttcagcaacactcagcaaggagatccgcccagtt
tgcaaaaaatttatgcaagatcctatggaaatttatgttgacgatgaggccaagttgacc
cttcatggacttgtacagcactacattaaattgagcgaaaccgagaaaaaccggaaacta
aatgatctgctggacgccttggacttcaaccaagttgttatatttgtcaagagtgtaagt
agggctgcacagctggataaattactagtggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagattgactcgctacaagggtttcaaggagggtcacaag
agaattctcgtcgcaactgatctggttggtaggggcattgacatcgaaagggtcaacatt
gttattaactatgacatgccggattctgcagacacttatcttcacagagtgggtagagct
ggtaggtttggaactaaaggccttgccatcacatttgtgtcttctgcatcagattctgat
gttctaaatcaggttcaagaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttctacatacatgccatcttag
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integrated database retrieval system
