Nicotiana tabacum (common tobacco): 107814392
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Entry
107814392 CDS
T04643
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107814392
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107814392
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107814392
mRNA cycle factors
Common to processing body (P body) and stress granule
107814392
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107814392
NCBI-ProteinID:
XP_016495286
UniProt:
A0A1S4C2B6
LinkDB
All DBs
Position
Un
AA seq
995 aa
AA seq
DB search
MMTIPMDSAVDHLSREQVQRLYNKNVELENKRRKAAQARVPSDPSAWQQMRENYEAIILE
DNAFSEQHEIEYALWQLHYRRIEELRAHFNAAVNSSVSTNSQNGKVPRRSGPDRVTKIRT
QFKTFLSEATGFYHDLMLNIRAKYGLPLGLFSDDQENQIPSSKDGNKSVEVKKGLISCHS
CLIYLGDLARYKGLYGVGDSKACDFAAASCYYLQASSLWPSSGNPHHQLAILASYSNDEL
VAIYRYFRSLAVESPFATARDNLIIAFEKNRQCYSQLVGDTKASSTKAVRPRTTGKGRSK
GETRHPLKDGRVEASSVQEKGSSMSDIFKTFSTRFVRLNGILFTRTSLETFGEVQSVVKN
DLLELLSSGTDEKYNFGSDTADCKLAFVRLVAILIFTVHNVNKESENQSYAEILQRSVLL
QNAFTAVFEFMGHVVERCVQLNDPTTSFLLPGVLVFVEWLASRQDVALGNEPEEKQTRAR
SFFWKNYIAFFNKLLSSGFKFVAYDKDDACFFNMSRYDEGESDNRLALPEDFELRGFIPF
LPAQLILDFSRKHSFGGDGGIKEKKSRLRRIIAAGKALANVVRVGEEGIYFDGRAKKFIL
GIEPQVSDDYALNCSMEVTKLSGIELENSAAGQLTVGALQPKQQLYVEGEEEDEVIVFKP
SVVEKHVNGSASNMMTSEGHVSGVSAASVPPAVSVASVGLGKEMGPFSAALDGLIMQSAL
HASARPPSSIANNSGQYMQPIQPSALLWSVERAAVMNGFGSLNMIRNGPAIISELQDQVF
PPMPYSVPFPQSFNFGMTNNIPVHIPDAAIPSNFSSLSSSVVGIHSMSIKSPSVMSTGIR
KNPVSRPNRHLGPPPGFGSVPSKVLEESSSAMTIKNEHTTLPPMDDFSWLAGYQLPSSHQ
SIGFNNSINHSTQNYHSMSKSSSSVGMVSFPFPGKQVNSLHVQSGNRRGWEDYQISEQLK
LYQEQPQQLQSGNQQSVELPQRHEGQSLWEGRFFV
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccattccaatggatagtgctgtcgatcatttgtctcgcgagcaagttcagcgc
ctctacaacaagaatgttgagttggagaataaacgtagaaaagcagcacaagctagagtt
ccttctgacccaagtgcatggcaacaaatgcgagaaaactacgaagctatcatccttgag
gataatgccttctcagaacaacatgaaatagagtatgccttgtggcagttgcattacagg
agaattgaggaattgcgcgcacacttcaatgctgctgtaaattctagtgtgtcaaccaat
tctcagaatgggaaagttccccgtcgtagtggacctgatcgcgtcacaaagatcagaaca
cagtttaaaacttttctttcagaagcaacaggcttttatcatgatttgatgctaaatatt
agggccaagtatggcctgccgctgggattattctctgatgatcaagaaaatcagattcct
tcctctaaagatggtaacaaatctgtggaggtgaagaaaggattgatatcctgccatagt
tgtttgatttatcttggcgatcttgctcggtacaaaggcttatatggtgtgggtgattcc
aaagcttgtgattttgcggctgcttcgtgttattacctgcaagcttcttcactttggcct
tcaagtggcaatcctcatcaccagcttgcaatactggcttcctattccaatgatgagctt
gtggctatttatcgctattttcgcagtcttgcagtagaaagcccttttgccacggcaagg
gataacttgatcattgcatttgagaagaaccgtcagtgttactctcaacttgtgggggat
actaaagcttcctccaccaaggccgtacgtcctcgtacaactggcaaaggaagaagtaaa
ggagaaacgaggcatccactgaaagatggtagggttgaagcaagttcagtccaggaaaaa
ggttctagtatgtctgacatcttcaaaaccttcagcacaagatttgttcgattgaatggt
attcttttcactcgcactagtttggagacttttggagaagtgcaatcggtggttaaaaat
gatctgcttgagcttctctcttctgggactgatgagaagtataattttggttctgacact
gccgattgtaaactggcttttgtaaggctcgtggccatcctaatattcactgttcataac
gtgaataaggaaagcgaaaaccagtcatatgctgagattttacaaagatcggttcttcta
cagaatgcattcactgctgtgtttgagttcatgggtcatgtagttgaaagatgtgtccag
ttaaatgatcccacaacaagcttccttttgccaggggttttggtgtttgtagaatggtta
gcgagccgtcaagatgttgcacttggcaacgaaccagaagagaagcaaaccagggctaga
tcatttttctggaagaactacattgctttctttaataagcttttgtctagtgggtttaag
tttgttgcttatgacaaggatgatgcgtgcttcttcaatatgagcaggtatgatgaagga
gagagcgataatcgtcttgcattacccgaggattttgagctgagaggatttatacctttt
cttccggcacaacttatccttgatttttcaaggaagcattcctttggtggtgatggtggc
atcaaagagaagaaatcacgtctccggaggataatagcagcaggaaaggctcttgctaat
gtggtccgtgttggagaagagggaatatattttgacggtagagcaaagaaattcatcctt
ggcattgagcctcaagtatctgatgattatgcgcttaattgctccatggaagttaccaaa
ttgagtggtattgagttggagaattcagctgcagggcagttaactgtaggagctctgcag
ccaaagcaacaattgtatgtggaaggtgaggaagaagatgaggtaattgtttttaagcca
tcggtggtagaaaagcatgtgaatggaagcgcttcaaacatgatgacctcagaaggtcat
gtttctggtgttagtgctgccagtgttcctcctgcggttagcgtggcctctgttggtcta
ggaaaagaaatgggtccattttcagctgcacttgatggattgatcatgcagagtgcatta
catgctagtgcaaggccaccctcaagtattgccaataacagtggccaatatatgcagccc
attcaaccaagtgctttattgtggtccgttgaacgagctgctgttatgaatggatttggc
agcttgaacatgataagaaatggtccagctataatatctgagttgcaagatcaagtattt
ccacctatgccatattctgtcccttttccccagtctttcaattttggcatgacaaataat
attcctgtgcatatcccagatgctgccataccatctaacttcagttcactttcatcctca
gtagttggtattcatagcatgtcaattaagtccccatcagtcatgtcaacaggcataagg
aaaaatccagttagcagacctaataggcatctgggtccgcctccaggctttggttctgtt
ccttcgaaagtcctggaggagtcttcttcagcaatgaccataaagaatgaacatactact
cttcctcctatggatgactttagctggctggctggatatcagttgccttcatcacatcag
agcattggtttcaataactccattaatcattcaacacaaaactaccactcaatgagcaag
agtagtagctccgttgggatggtgagctttcctttccctgggaaacaggtaaactctctg
catgtgcaatcagggaaccggagaggttgggaggactatcagatatctgaacaattaaaa
ctgtaccaggagcaacctcagcaactccagagtggaaaccaacagtctgttgaactgcct
cagcggcatgaaggacagtctctgtgggaaggccgtttttttgtgtga
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