Nicotiana tabacum (common tobacco): 107815007
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Entry
107815007 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107815007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107815007
03009 Ribosome biogenesis [BR:
nta03009
]
107815007
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107815007
Spliceosome [BR:
nta03041
]
Complex A
U1 snRNP components
U1 related factors
107815007
Complex B
107815007
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107815007
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
107815007
NCBI-ProteinID:
XP_016495998
UniProt:
A0A1S4C4L7
LinkDB
All DBs
Position
Un
AA seq
1161 aa
AA seq
DB search
MPTAEAAPASLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPSALAPPLP
PGKPPEAATPKLAPIPGASTVQQNDAHGQQSQQACTQQGQQMTQMSQHSQVTQQVPHGLQ
GVSIGQQQGSAAGPAMQQVPFTLQFRPQMIQQPGHQMPSQMGQTPNQPGPHVSQPVMQQI
MPQQLGPQTQAFPGVQMGQPHGYQFSHHQTPQTPQHITYSQNLPPQGQQIPQQNQHVPLN
QQYSHQQEHKMGFQQREDVDFPHGRQVGFSPQQVQQTGASSTQNLPMGTGSVIRPQMSAQ
PAQALPFGGSSVNIQQPSSLGQWQQNANDSGHKPPGPRFPGEMGSGMVHGQELDTPPVGS
KGYEENSFGRGGNEYYYTSNMDGRIRPPPQQPKLAAIPIARNRHETRMGDPPLQNPAPAL
PSGFNSTGGPPMQNIYGQAAGGPPFPNPNLMRPPAALTGPPGAIHPSPVEVYLQKHEVTA
TGGDVPAPFMTFEDTGFPPEILREIHVAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGK
TLGYLIPAFVHLKRCRNNPQNGPTVVVLAPTRELATQIQDEALKFGRASRVSCTCLYGGA
PKVHQLKELERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKI
VNEIPPQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYVEVVPQME
KQRRLEQILRSQERGSKAIIFCSTKKLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQF
RSGKTPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGISYTFLSD
QDWKYAPDLVKVLEGANQHVPPNVREMALRAGGRDRGGMNRFDLVEGDGSRTRWDSGGRG
GMRDGAFGGRGGMRDGGFGGRGGMRDGGFGSPGGMRDGGFGGRGGRESNFGSRGGRDGHF
GGRGGRDGHFGGRGGMRDSYFSGRGGRGGAVGGWDRNARYDSSDVRGRDRGRGRGHFDNR
RDMPSRSRGRSYSPSPERVRTWGSRSRSRSRSRSRSRSRSRSRSYSRSYSRSRSYSPRHS
RSCSRSRSRSHDRYQRRPRQSKFDQMEPDPGMSNVQVAPSGMPPLSIGAPIDGFSGAAPV
EFKPNMEVAPESGMSPMSPGT
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgccaactgctgaggcagctccggcttccttaggacctcgttatgcacccgatgatcca
actttaccgcaaccttggaagggcttaattgacggcagtactgggttattgtactactgg
aatccagaaactaatgttactcaatatgagaagccatcagctttagcccctccactgccg
cctggtaaaccaccggaagctgctacacctaagttggctcctataccaggagctagtaca
gtgcaacaaaatgatgctcatggccaacaaagccagcaggcgtgtactcaacaaggccaa
caaatgacacagatgtcccaacattcacaagtaacacaacaggtaccgcatggattacaa
ggtgtttcaatagggcagcaacaaggatcagcagcgggtcctgctatgcaacaggtaccc
tttacgctgcagtttcgaccccaaatgatccagcagcctggtcatcagatgccatctcaa
atggggcaaactcctaaccagccaggcccacatgtttctcaaccggtgatgcaacaaata
atgccacaacaacttggcccccaaacacaagcatttccaggtgtacagatgggacagcca
catggttatcaattttctcatcaccagacaccacagacaccacagcatattacgtattca
cagaacttgcctccacaaggacagcaaattccacagcagaatcagcatgttccgctgaat
caacagtactcccatcaacaagagcataaaatgggatttcagcaaagggaagatgttgat
ttcccccatgggagacaagttgggttttcgccacaacaagttcagcaaactggtgcatcc
tctactcagaatctgcctatggggactggatctgttatcagacctcagatgtctgctcag
cctgctcaagctttgccgtttggtgggtcttctgtaaatattcaacaaccatcatctttg
gggcagtggcagcaaaatgcaaatgattcaggtcacaagccacccggtccacgatttccc
ggtgaaatgggctcaggtatggtacatggccaggagctggatacgcctccagttggatca
aagggttatgaggaaaactcgtttggaagaggaggaaatgagtattattacaccagtaac
atggatggtcggattaggcctccgcctcagcaacccaagcttgcagctatacctatagca
agaaatcggcatgaaacgagaatgggtgatcctccgcttcaaaatccagcaccggctctt
cctagtgggttcaatagtacaggtggtcctccaatgcaaaatatctatggtcaagcagct
ggtggccccccatttccaaatcctaacctcatgaggccacctgcagcactcactggacct
cctggagctattcatccatcgcccgttgaggtttaccttcagaagcatgaagtgactgcg
acaggtggtgatgtccccgctccattcatgacctttgaagatactggcttccctccagaa
atactcagagagattcatgttgcgggattcacttcgcccactcccattcaggcacaaaca
tggcccattgcgttgcaaaatagggatatagtagccattgccaagacaggttctggcaaa
acattgggctatctgattcctgcatttgtccaccttaagcgatgccgcaataatcctcaa
aatggcccaacagtagtggttttagctccaacacgagagcttgcaacacaaatacaagat
gaagctcttaaatttggccgagcttcaagggtttcttgcacatgcttgtacggaggtgca
ccgaaggttcaccagttaaaagaactagagcgcggagcagacattgttgttgcaactcct
ggtcggcttaatgacatccttgaaatgaaaagaattgactttaggcaggtttctcttctc
gtgctagatgaggctgatcgaatgcttgacatgggctttgaacctcagattcgcaagatt
gtaaatgagatacccccacaaagacaaacacttatgtacacagcaacctggcccaaagaa
gtgcgaaaaatagctggcgatcttcttcgaaatcctgtccaggttaatatcgggaatgtt
gatcagcttgcagcaaacaagtctatcacacagtacgttgaagtagtcccgcaaatggag
aagcagagacggttggagcagattcttagatcccaagaaaggggttctaaagctattata
ttctgttccacaaaaaagttgtgtgaccaacttgcacgcagcattggccgaagctttgga
gccgcagctattcatggagacaagtcccagggtgagagggactgggttctcaatcaattt
cgctctggtaagaccccaattttagtagcaactgatgttgctgctagaggactggacata
cccgatattagagtggtgatcaactatgattttccaactgggattgaggattatgttcat
cgaattggaagaactggtagggctggtgcaactggtatttcatacacctttttatctgat
caggactggaaatatgctccagatctggttaaagttctggaaggcgcaaaccagcacgtg
cctccgaatgtaagagagatggctttacgtgctggtggcagggatagaggtggaatgaac
cgatttgatcttgttgagggtgatggtagccgcacacgctgggattctggtggccgtggt
gggatgagggatggtgcgtttggtggccgtggtgggatgagggatggtgggtttggtggc
cgtggtgggatgagggatggtgggtttggtagtcctggtgggatgagggatggtgggttt
ggtggccgtggtggaagggagagcaactttggtagccgtggtgggagagatggtcacttt
ggtggccgtggtgggagagatggtcactttggtggccgtggtgggatgagggacagctat
tttagtggccgtggtggcaggggtggcgcagttggtggttgggacaggaatgctcggtat
gatagctcggatgtgcgaggacgtgatagaggccgagggcgtgggcattttgacaataga
agagacatgccgagtcggagtcgaggaagaagttacagccctagtccggagagggtgcga
acatggggtagccgaagcaggagtcgcagcagaagcaggagtcgcagcagaagtcgcagc
agaagcaggagctatagcaggagttacagccggagccgcagttatagcccaaggcatagt
cgcagctgtagccgcagccgcagccgtagtcacgatagatatcaaaggaggccacgccaa
tctaaattcgatcagatggaaccagatccagggatgtcaaatgttcaggttgctccatct
gggatgcctccattgtctataggtgcaccaattgatggattttctggagctgcaccagtg
gaatttaagccgaatatggaggtagctccagaatctggtatgtcgcccatgtctccagga
acatga
DBGET
integrated database retrieval system
