Nicotiana tabacum (common tobacco): 107815439
Help
Entry
107815439 CDS
T04643
Name
(RefSeq) uncharacterized protein LOC107815439 isoform X1
KO
K24738
rabconnectin-3b
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta04142
Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
107815439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nta04131
]
107815439
Membrane trafficking [BR:
nta04131
]
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
107815439
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_EML
ASA1
DSE1_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
PAC11
Beta-prop_TEP1_2nd
Beta-prop_EMC1_N
Motif
Other DBs
NCBI-GeneID:
107815439
NCBI-ProteinID:
XP_075101574
UniProt:
A0AC58TWK0
LinkDB
All DBs
Position
23:complement(136599706..136610210)
Genome browser
AA seq
1511 aa
AA seq
DB search
MKCKSIACIWSGSPPVHKVTAVAALNNPPTLYTGGSDGSIIWWNLSSSSSTSNQEITPVA
MLCGHVAPIADLGICVPTTVSGDGKLDDSNNAVSTSNSSNCGALLSACTDGVLCIWSRAS
GQCRRRRKMPPWVGTPYLIRPFPENRRYVCIACCSFDHVHLSDHHSPVSIEKGETIADRD
PQHAKPVKCTVVIVDTYTLGIVQTVFHGSLSIGPLKSVAVISSFGDVLTESVMMVDSFGK
AQCIPILKECDSSTESMTSKSSLSDAGKMNWVNGSNDRGLLVAFANRGPILAFVYGTCCI
FSQVEDGSVMGEISFSDDLLSIEGKSYVIGGMFVVDDNDLLDSEDSDATFIENFAVWNGK
GAAIVYRICYSSNIFKYEPFAAIPVICQESGMSLSISFVQLNNFLFRIESISFPINELLI
WKPRLTCWVLPKLQDKNEINCQECRLLGEGRIFDDWTHNQYASENEIVGQVVDIDTAGGK
ATITSSQGAGTCSKAIDERISNITKNGTYERKELVSSSMVISEEYVPLAIVYGFYNGDIK
VVRFDMFFEGLDCHGQNPYPESKAHATQHYLLGHTGAVLCLAAQRALIRCQGGSYSYVLL
SGSMDCTVRVWDLDSSSPMIVMHQHVAPVRQIILPPSQTERPWSNCFLSVGEDSCVALSS
LDTMRVERMFPGHPYYPAKVVWDSRRGYVACLCPNQTGTSDADVLFIWDVKSGARERVLR
GAAALSMFEHFCIGIDRDLPHGSRISGNTSASSLLFPVSEETKYPPSHSQTLGKGTSLSN
ISVSTSVSGSTTGSNQSALFALQSRKQPVKGSCPFPGVAALSFDLTSLMSLCQTHEYYRA
ECSNPGKNQVKVIRVESPIKRSDFRDQETEVPSSSDERINDEFAGTSNEAARGPEWMFLL
EQCLLQFSLSILHVWNVDPELDKLLVTEMKLKRPQNLLVASGLLGDRGSLTLTFPDYRST
LELWKSSSEYCAMRSLTMVSLAQHMISLSHSFQAASSSLSAFYMRSFAEKVSDIKPPLLQ
LLVSFWQDEAEHVKMAARSLFHCAASRAIPSPLRRDNTRDKENGVSLSGNHDAVSTEEPT
NCLKDDSQIVTEGNSEDEQSEIRSWLESFEMQDWISCVGGTSQDAMTSHIIVAAALAVWY
PSLVKPNLVVFAVNPLVKLVMAMNEKYSSTAAEILAEGMESTWKACIGSEIPRLIGDIFF
QIECVTGASANTPSKNPSTSVMIRDTLVGILLPSLAMADVLAFLNVIESQIWSTASDSPV
HVVSLMTIVRVARGSPRNLVQYLDKVVTFILQTMDPGNLVMRRTCLQNSMAALKEIARIF
PMVALNDPLTRLAVGDAIGAINNASIRVYDMQSITKIKVLDASGPPGFPSLLGGASGMTV
TTAISALSFSPDGEGVVAFSETGMMIRWWSYSSGSVWWEKLSKNLVHVQCTKLIFVPPWE
GFSPNANRSSIMASVFGKDGEANPKENNASNELDRFKHLLQNIDLSYRIEWVGQRKIKLT
QHGRDLGTFQL
NT seq
4536 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgtaaatccattgcatgtatatggtccggttcaccgccagtccacaaagtcacc
gccgtcgccgcactgaacaatcctcccactctctacaccggcggttccgatggctccatc
atctggtggaacctctcctcctcctcctcaacctccaatcaggaaatcacaccggttgcc
atgctttgtggtcatgttgctccgatagccgatctagggatttgtgttcctactacagtt
tcgggagatgggaaattagacgattcaaataatgcggtatcaacttctaactcatctaac
tgtggtgcattattaagtgcatgcactgatggtgtgttgtgcatttggagcagagccagt
ggacaatgcagacgtagaaggaaaatgcctccctgggtggggacgccatacctaattcga
ccatttcccgaaaatcgtagatatgtatgtatagcttgttgttcctttgatcatgttcat
ttatctgatcatcactcgcctgtttctattgagaagggtgaaacaatagcagatagagac
ccacaacatgctaaacctgtaaagtgcacagttgttattgttgatacgtatactcttggt
atcgtccaaacagtttttcatgggagcttatccattgggcctttgaaatctgtggctgta
atttcatcctttggagatgtattgacggagtcagtgatgatggttgattcttttggtaag
gcacagtgtataccaatattgaaggagtgtgattcaagcacagaaagcatgacctccaag
agtagcttgtctgatgcaggcaaaatgaattgggtaaatgggtcaaatgacaggggactt
ctggtggcctttgcaaatcgtgggcccattttagcttttgtatatggtacatgctgcata
tttagtcaagtagaggatggcagtgtcatgggagagatatctttctcagatgatctgctc
tctattgaagggaagtcgtacgtcattggtggcatgtttgttgtagatgataacgatctg
cttgattctgaagattcggatgccacattcattgaaaattttgctgtatggaatggtaaa
ggtgcggccatagtatacaggatatgttactcaagtaatatcttcaagtatgagcctttt
gcagctatccctgtcatttgtcaggagtctggcatgagcttatctatctcctttgtgcaa
ctgaacaactttcttttccgcattgaatcaatttcttttcctatcaacgaattattgatt
tggaaacctcgcctgacatgttgggtattgcctaagctgcaggacaaaaatgagataaat
tgtcaagaatgcagacttttaggtgaaggtagaatatttgatgattggactcataaccag
tatgcctctgaaaatgagattgttgggcaggttgttgatatagacacagcaggtgggaag
gccacaataacttcctcccaaggtgctggtacttgttctaaagctattgatgaaaggata
tcaaacatcactaaaaatggaacttatgaaagaaaagagctagtgtcttcttcaatggtt
atttctgaagaatatgtgcctttggctattgtatatgggttctataacggtgatataaaa
gttgttcgatttgatatgttctttgaaggattagattgtcatggtcaaaatccatatccc
gagtcaaaagcacatgccactcaacattatctcttggggcatacaggcgctgtactgtgt
ttggctgcacagcgagcgctgattagatgtcaaggaggtagctacagttatgttctactc
tcaggaagtatggattgtactgtccgtgtatgggatcttgactctagcagtcccatgatt
gtaatgcaccaacatgttgctccagttcgccaaataattcttccaccatctcaaacagaa
cgtccatggagtaattgcttcctctctgttggggaagactcatgtgttgccctttcttca
cttgataccatgcgtgtagagcgaatgttccctggccacccatattatcccgcaaaagtt
gtgtgggatagtagaagaggatatgtagcatgtctgtgtccaaaccaaacaggaacatct
gatgcagatgttttgttcatttgggatgtaaaatcaggtgctcgtgagcgggtccttcgc
ggagctgctgctctctcaatgtttgaacatttctgcataggaattgacagagatctccct
catggcagtaggataagtggaaatacttcggcttcctcattgctttttcctgttagtgaa
gaaaccaagtatccaccatctcattcacaaactctgggaaagggtacttctttatcaaat
atatctgttagtacaagtgtgtctggaagtactacgggatctaatcaatctgcattgttt
gccttgcaaagcagaaaacagcctgttaaaggctcttgtccttttcctggagttgccgct
ctgtcttttgatctcacgtccttgatgtctctatgtcagacacatgagtactatagagca
gagtgttccaatcctggtaaaaaccaagtgaaagtaataagggttgagtctcccattaag
aggagtgatttcagggatcaggaaactgaagtacctagttccagtgatgagagaatcaat
gatgaatttgctggtacctccaatgaagctgcaagaggtcctgaatggatgttcttgctt
gaacaatgcctgcttcagtttagcttgtctattttgcacgtgtggaatgtggaccctgaa
ctcgataaattgctagtcactgaaatgaagctaaaaagaccgcagaatcttctcgtagct
tctggtctcttgggggatcgggggtccttgactctgacttttcctgattataggtcaact
ctggagctttggaaatcatcatcagagtactgtgcaatgagatctctaacgatggtgtcc
cttgcccaacatatgattagcttgtcacattcctttcaggcagccagcagttctttgtca
gcattttacatgcggagctttgctgagaaagtttctgatataaagcctcccctgcttcag
cttttggtgagcttttggcaagacgaggctgagcatgttaagatggcagcacgttcctta
tttcattgtgctgcttcacgggctataccatctccactacgtcgggataatacaagagat
aaagagaatggagtatcactaagtggaaaccatgatgcagtctccacagaagaacccacc
aactgcttgaaggatgacagtcaaattgtcaccgaagggaactctgaggatgagcaatct
gaaataagatcttggctagaatcatttgaaatgcaagattggatttcttgtgttggggga
acgagccaagatgcaatgacatcccatatcattgttgctgctgcattggctgtttggtat
cctagccttgtgaaaccaaatcttgttgtcttcgctgttaatccattggtgaagttggtt
atggcgatgaatgagaaatatagctctactgccgcagaaattctggcagaagggatggaa
agcacatggaaggcatgcattggttctgaaataccgcgcctgatcggagacattttcttc
caaattgagtgtgtcactggtgcatccgctaatacaccttccaagaatccatctacatct
gttatgattcgtgatactttggttggaattcttcttccaagtttagcaatggctgatgta
ttggcctttctgaatgtcatagaaagccagatctggtcaactgcctctgattcacctgtt
catgtggtatccctcatgactatagttagggttgcacgtggttctccaagaaacttagtt
caatatcttgacaaggtagtcactttcattttacagacaatggatcctggtaacttagtc
atgcgaagaacttgcttgcaaaattcaatggcggcattgaaggaaattgcacgcatattc
cctatggtggcactaaatgatccattgacacgattagctgttggagatgcgattggagcg
attaacaatgcaagcattcgtgtatatgacatgcaaagcatcacaaaaataaaggtctta
gatgcaagtggacctccaggatttcccagtttgcttggaggagcttcaggaatgactgtg
actactgcaatatcagctcttagcttttcaccggatggagagggggtagttgctttttct
gagactgggatgatgataagatggtggtcttactcgtcgggatctgtgtggtgggagaaa
ctgagcaagaatctagttcatgtccagtgcacaaaactgatttttgtcccaccttgggag
ggattctcgcctaatgctaatagatcaagcataatggcaagtgtattcggtaaagatgga
gaagctaatccaaaggagaacaatgcgtcgaatgaactggacagatttaaacatctgctt
cagaatattgatctttcttacagaatagaatgggttggtcaaagaaaaataaaactcacc
caacatggccgtgatttgggcactttccagctatga
DBGET
integrated database retrieval system
