Nicotiana tabacum (common tobacco): 107816608
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Entry
107816608 CDS
T04643
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03440
Homologous recombination
nta03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107816608
03460 Fanconi anemia pathway
107816608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nta03400
]
107816608
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107816608
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107816608
FA (Fanconi anemia) pathway
Downstream FA components
107816608
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
107816608
NCBI-ProteinID:
XP_016497825
UniProt:
A0A1S4C9L2
LinkDB
All DBs
Position
Un
AA seq
1280 aa
AA seq
DB search
MKNYKPAPPPSATQNPKSSKHVVHIGGIPVEFPYQPYGTQLAFMNRVIATLDRAHREGRS
HALLESPTGTGKSLSLLCSALAWQQKFKSKNLNFSSHLTHSKPDPQAVADPIGHGGGFIP
ETQPSGNPDTTSSAATNGENKKKNVAPKIFYATRTHAQIAQVIREYRKTSYRVQMAVLAS
RRHYCTNMNVRGEDNIDEKCKLLVKDQEAGCSEFKNSHKVKGHPSLQKGGCHEAHDIEDL
VKVGRIVKGCSYFAARSMADDAELVFCPYSYIIDPVVRRAMEVDITGAIIILDEAHNIED
ISRDAGSVDVEEDTFLQLQMELEQLTLSDTMTYQPLVEVVQDILNWIDRKKNTLERHDFQ
HYFSCWTGDKALKELQEANVTKQCFPILQECAVKAIKAASEAEPETAHLSGMAAAVLEGL
FTSLRYFFSGNGLHVCDYQLALQRYVKKSPGTAVGSWTHTFSLWCLNPAVVFREIADSCL
SVILTSGTLSPMNSFSSELGVTFGTSLEAPHVIDVESQFWAAVISRGPRNYPLNASFKNT
DSYAFQDALGISLEEICKIVPGGCLIFFPSYKLMEKLSSRWKETGQWAQLNARKPLFVEP
RGGQEEFESVLKGYYSSINQKGKLMMGRKKKAKKSALSDSNPHEVSDENKKEGAAFLAVC
RGKVSEGIDFSDEKARVVIVVGIPFPNINDIQVSLKKKFNDIYKSSKNLLSGSEWYCHQA
FRALNQATGRCIRHRFDYGAVIFLDERFCEARNRTYISKWLRSSIRHFGSFDESIEELKS
FFRDIKERVGKAAISLQNSVIDVEENASLTKSIRTRQKNQKLSTYNVKGLKEEQNGALIS
QKAVLLCQSSPINTTYNTSSTKMKVHAPHLMLSDNEDGHRGYIDLECGSEKSPRFSGDPL
ISSDLDLTIVKETPCPDDIIHISSPQSFSKDEYSSSTIIQASGELSDYLANHPITQQNTA
LGCKSSSLMLTPEKDVCTKANRISCDVESSINSSVNSRVGKRIKRLDLSSIVHLRAEEFD
SQVTNTPMHDSSTCRSRKIKDAYQRIDSGSRISQLDTELEKFKFLTSPVLNNCETSVLQS
KLAMQERLQIFCSLCENPLGLPENNLFVMCSRTSSTKTHLKSLWKGQLETPDSSRHSIPI
LVANFSSVDQRIYERTSDSLSVQGIWCKEDGCVFKTIFCPFCVNSRHCLGVQVMASDAAN
VQLLNKVLLYCDCLVIKEPEASRKELSPSTNSSSDRGGINSIESFSFTPRQQNLGGWRTT
KSKMRLPKRSISSSAQTDVE
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattataagccagcaccaccgccgtcggcgactcaaaaccctaaatcctcaaaa
catgtggtgcatattggcggcattccggtggagttcccataccaaccctacggtacacag
ctcgctttcatgaatcgagtcattgcgacacttgatcgagcacatagggagggtcgctct
cacgcgctgctcgagtctcccaccggtactggaaagtcgctgtccctgctttgctcagct
cttgcttggcaacaaaaattcaagtctaagaatcttaatttttcttctcatctcacccac
tccaaacccgatcctcaagccgttgccgatcctattggtcatggcggcggttttattcct
gaaacgcagccctcagggaacccggatacaacatcatcggctgcaactaatggggagaac
aagaagaaaaatgtggcgcctaaaatcttttatgccacgaggacacatgcacaaattgct
caagtgattcgggaatacagaaagacaagttatcgggtgcaaatggctgtgctggcttca
cgaagacactactgtacaaatatgaacgtacgaggtgaagacaacattgatgagaaatgc
aagttattagtaaaggatcaagaagctggatgctcagaattcaaaaattctcataaagtc
aaaggtcatccatcccttcagaaaggagggtgccacgaggctcatgatattgaagatctt
gttaaagttgggcgaattgttaaaggctgctcatactttgcagcgcgttccatggctgat
gatgcggaattagtgttctgtccatacagctatatcatcgatccagttgttaggagagca
atggaagtagatataacaggggccatcattattctcgatgaagcccacaatatagaggac
atttctcgtgatgctggtagtgtggatgttgaggaggatacttttcttcagttgcagatg
gaactggagcaactcacactatctgatactatgacttaccaacctttggtagaagtggta
caggacatactgaattggattgataggaagaaaaatactttagaaaggcacgacttccaa
cactatttctcatgttggactggtgacaaggccttgaaagagctacaagaagccaatgtg
acaaagcagtgctttcccattttacaagaatgtgccgtgaaggccatcaaagctgcatct
gaagctgagccagagacagctcatttgagtggcatggcagcagctgtattagagggactg
ttcacctcacttcgttacttcttctcgggaaacggtcttcatgtgtgtgattatcagcta
gctttacaacgatatgtaaagaaaagtcctggaactgctgttggtagctggacacatact
tttagtttgtggtgcttaaatccagcggttgtgttcagagaaattgctgattcttgtctg
tcagtgattctaacatcagggactctgtcaccaatgaattcattttcctctgaacttggt
gttactttcggtacttctctggaagctccacatgttatagatgttgaatcacagttttgg
gctgctgtaatctcgagaggaccaagaaattatccgctgaatgcaagtttcaaaaataca
gattcatatgcttttcaggatgcacttggcatatctttagaggaaatatgcaagattgtt
cctggcggttgtcttatattctttcctagctataagctgatggagaaattaagcagtcgc
tggaaagaaacaggtcaatgggcccaacttaacgctcgaaagccccttttcgttgagcca
agagggggtcaagaagaatttgaatcagttttgaagggttactacagttctattaaccaa
aaggggaagctaatgatgggaagaaagaaaaaggcaaaaaagtcagctcttagcgacagt
aatccacatgaagtttcagatgaaaacaagaaagagggggctgcttttcttgctgtttgt
cgaggaaaggtttctgaaggcatagacttttccgacgagaaggctcgtgtagtcatagtt
gtaggcattccctttccaaacataaatgatattcaagtctctcttaagaagaagttcaat
gatatttataagtcatctaaaaatcttctgagtgggagtgagtggtattgtcatcaagcc
ttcagagctcttaaccaggctacaggtcgttgcatacgccatagatttgactatggagct
gtgatctttttagatgagcgtttctgtgaggcaaggaatagaacttatatttcaaagtgg
ttgcggagttcaataagacacttcggcagctttgacgagtcaatagaagaactgaaatcc
tttttcagagatatcaaagagcgtgttggcaaggcagccatttccttgcaaaattctgtt
attgatgttgaagaaaatgcttctctaaccaagagcataagaaccaggcagaaaaatcag
aaattgagcacttataatgtgaaagggcttaaggaagaacaaaatggtgcattgattagt
caaaaagctgttctcttatgtcaatcttcacctattaatacaacgtataatacatcctcc
acaaaaatgaaagttcatgctccgcatttgatgttaagtgataacgaggatggtcacaga
ggttacattgatttggaatgtggttcagaaaaatcacctaggttttctggagatccattg
atctccagtgaccttgacttaaccattgtaaaagaaactccttgtcctgatgacattatt
cacatttctagtcctcaatccttctccaaggatgaatattctagctcaaccattattcaa
gcatctggtgagctctcagactacttggcaaatcatcctataactcaacaaaatacagcg
ttgggttgtaaatcttcctctttgatgcttactcctgaaaaagatgtttgtaccaaagca
aacaggatatcgtgtgatgttgaatcatcaattaactcaagcgtcaattctcgtgtgggg
aaaaggataaaacgcttggatttgtcgtccattgttcatctccgtgcagaagaatttgat
agtcaggtgaccaacactcctatgcatgatagttctacatgtagatcaaggaagattaaa
gatgcataccagaggattgattccggttccagaattagtcagttagacacggaactggag
aagttcaaatttctgacgtctccagtcctgaataactgtgagacttcagttttgcagtct
aaacttgctatgcaggaaagactacagatattttgctcactttgcgaaaatccactgggg
cttcctgagaacaatttatttgttatgtgctcacgaacttcgtcaacaaaaactcacttg
aaatctctttggaagggccaattagaaacccctgattcgagcagacatagtatacctatc
ctcgtagctaacttttcgtctgttgatcaacgcatctatgaaagaaccagtgacagttta
tcagtacaggggatttggtgcaaagaagatggttgtgttttcaaaactattttctgcccc
ttttgtgtaaattccagacattgtcttggtgtacaggtcatggcttctgatgcagctaat
gtacagttactaaataaggtgctgctttattgtgattgcttggtgataaaagagcctgaa
gcgtcaagaaaggaattatctccgtccaccaattcaagctctgatagaggaggtattaat
tccattgagagtttctcatttactcctcggcagcagaaccttggaggatggagaactaca
aaatcaaagatgcggttacctaagaggagcatctcatctagtgcacagactgatgtagaa
tga
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integrated database retrieval system
