Nicotiana tabacum (common tobacco): 107817079
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Entry
107817079 CDS
T04643
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107817079
03015 mRNA surveillance pathway
107817079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107817079
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107817079
mRNA cycle factors
P-body specific factors
107817079
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107817079
NCBI-ProteinID:
XP_016498342
UniProt:
A0A1S4CAT7
LinkDB
All DBs
Position
Un
AA seq
508 aa
AA seq
DB search
MKGPLDRTKVVLRHLPPTISQSMLVEQVLSRFTGRYNWFSFRPGKSSQKHQTYSRAYVDF
KRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRAPKRWSKKDGREGTILKDPEYLE
FLEFIAKPIENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARKSLSNG
RPTRRANGTSSGSPSSSAFKQGSEKRRVSTTMYVLRDSSKAGSGKDKRHILVPKRDDQQQ
AEKSGTSAPGSGADAVEEETGGAADVGKKKILLLKGKEREIPNVSSGSLIQDNAAPIVKN
TITSSAPQQNQRREASGKIIRSILLKDARQNQAPSASQQEQHSQDKDKKPPRPPSVQLFQ
KEINGVNEDKIVGTDLHVVHTEKQERRSRIRDRPDRGVWTPLRRADSLHASDESLSSSTS
QSSEVLDSLEGSQGETKNDLPNVRGGEFRPMGSGRNSHSSFDNGTYKRRGMRDDGISVGE
GKPLRRGGPSNYGTHEKQVWVQKSSSGT
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaccgttagatcgaacaaaagtagtgctgcggcacttgccccctacaatttct
cagtctatgcttgttgagcaagttctttcccgattcactggtcgctacaactggttctct
tttcgtcctggcaagtccagccagaagcatcaaacctattcaagagcatatgttgacttt
aagaggccagaagatgttatcgagtttgccgagttctttgatggacacgtttttgtaaat
gagaaaggcactcagttcaaaactattgttgagtatgctccttcacagcgtgctccaaaa
cgctggtccaagaaggatggccgcgaaggaaccatcttgaaagatcctgaatatctggag
ttccttgaatttattgcaaagcctatcgagaatcttccgagtgcagaaatacaattggaa
agaaaggaagctgaacgagctggttctgcaaaggatgctcctatagttactcctttgatg
gactacatacgtcagaaaagagctgccaagagtggagctcggaaatctctatctaatggg
agaccgaccagaagagcgaacggcacatcctcaggaagtcctagctcaagtgcatttaaa
caaggctctgaaaagagaagggtttctacaaccatgtatgttcttcgagatagttctaag
gctgggagtggcaaagacaaaagacatattttagttccaaaacgtgacgatcagcagcag
gctgagaagtctggtacctccgctcctggatctggggctgatgcagttgaagaggaaact
ggtggagctgctgatgttgggaagaagaaaatcctgctcttgaagggaaaggaaagagaa
attcctaatgtttctagtggttcattgattcaggacaatgcggcacctattgtcaagaat
acaataacatcatctgctccgcaacagaaccagcgccgtgaggcaagtgggaagatcatt
agaagtattcttctcaaggatgctcgtcaaaatcaagctccttctgcatcccaacaagaa
cagcacagccaggataaggacaaaaagcctcctaggccaccaagcgtgcagttgtttcag
aaagaaattaacggagttaatgaggataagattgttggaactgatttgcatgttgtccac
actgaaaagcaggaaagacgctctaggattagggataggcctgatcgtggtgtttggact
cctcttcgtcgtgctgatagtttgcatgctagtgatgaatccttgtcttcatctacctct
caatcttctgaagtgctggattctcttgaaggaagtcagggtgaaaccaaaaatgatctg
ccaaatgttcgtggtggggagttcagacccatgggaagcgggcgtaattctcattcttct
tttgacaatggtacttataaacgtcgtggtatgagggatgatggcatttcagtaggggaa
ggaaaacccttgagaaggggaggtccttctaactatggtacccatgagaaacaagtgtgg
gtccaaaagtcaagttctggtacttaa
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