Nicotiana tabacum (common tobacco): 107817412
Help
Entry
107817412 CDS
T04643
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107817412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
107817412
03019 Messenger RNA biogenesis [BR:
nta03019
]
107817412
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107817412
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
107817412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
107817412
NCBI-ProteinID:
XP_016498722
UniProt:
A0A1S4CBW8
LinkDB
All DBs
Position
Un
AA seq
1035 aa
AA seq
DB search
MEMEGSRRPFDRSRLEPGPKKPRLTEAGTERSSSNGSSFISQRAAASNSRNSDSIRGPYQ
QQQQHQELVSQYKTALAELTFNSKPIITNLTIIAGENLQSAKAIAATICNNIIEVPTEQK
LPSLYLLDSIVKNIGRDYIKYFAGKLPEVFCKAYRQVEPSVHPGMRHLFGTWKGVFPAQQ
LQLIEKELGFTTGVNGSSSGTSRPDPQAQRPAHSIHVNPKYLEARQRLQQSTRTKGAVSD
ISSTLNVNENVERPEITTSVSSGRSWIDPSVKRAQKEKLNEHVPEKSITAAYGDSDYGSD
LSRRSAFGVGRGGERFKEQGFDKPWYDSGTGKILSQRSGLDIKHGFQSISQKSATSDAHP
QLIQSLPNRTSTLTDRSWKNSEEEEYMWDDVNSAAKDRWASEDSDKSDLENQLRRPQSIR
EVVLRADSEASADSLSGDERGQTSFGNQNSAMWSRDSHALDGARHSSSLRSAPVHPEGYQ
TSFSSLSKAANSIGRTSFKSQTGSVHVGAPNFVPMNATLESRGSIVQQRETLRAASPSAH
SPMHQHPPSPSVITSNTNQIVNSLGEQYQPQTTSRSDPRISQFSRRSNLDPRNQFSQESL
AMPSRNAVSVNSQRQQPPNLQSASTLASSLQLRHDVQQESLESEYSGQTQNSAVPQISGF
PNPSSTSSLLAAVLKSGIIGSKSSSGTTPSSLDKGALSSQASAQPPLPSGLPPAQFSPAG
PRIPPASISSLSLDKNASSTPNYNSQRNVEQPPLPSGPPPTLVESASLQPLNAPNTASNP
LSSILSTLVAKGLISASKKESPTYTPSDTPPQTQNHIPPASSMSTPALSAPISSSIPFLA
PKAEISLSKPAAKTPDALLRSTKEEAKSLIGLAFKPDVIRKSHPDVIGELLDDVPHQCGI
CGFGLKLQEKLDRHLEWHALRNPDVKLLNNSRKWYLNSGEWIAGFGCLPCDKSKGTTGGS
NETSECTEAMVPADESQCVCVLCGELFEDFYNEESDKWMFKGAVYMSIPGEGGIQGPIVH
KNCISESSCQELGLA
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagggttctcgtagaccatttgatagatcaagattagagccaggacctaag
aaaccaagattaaccgaagctggaaccgagcggagcagctcaaatgggtcgagcttcatt
tctcaacgggctgctgcttcgaattcgaggaacagtgattcgattcgtgggccttatcaa
cagcagcaacagcatcaggagctagtgagccagtataagactgctttagctgaactgaca
tttaattcgaagcccattattacgaatttgaccattattgctggtgagaatttgcagtct
gctaaggcgatcgctgctactatctgcaacaacattattgaggttcctactgagcaaaag
ctgccatctctataccttttggacagtattgtgaagaacattgggcgggattatattaag
tattttgccggcaagctacccgaggttttctgcaaagcttatagacaggttgaaccttcg
gtacatcctgggatgcggcatctttttggaacttggaaaggagtatttcctgctcaacaa
ctccaattaattgagaaggagctcggatttacaactggtgtcaatggctcttcatcaggg
acatctaggcctgatccccaggctcaacgacctgcacatagcattcatgtaaatcccaaa
tatctggaggcaaggcaacgcctacagcaatcaaccaggacaaaaggagcagttagtgac
atcagcagcactcttaatgtaaacgagaacgtagagagaccggagataacaaccagtgtt
agctctggaagatcatggattgatccttctgttaagcgtgctcagaaagaaaagttgaac
gagcatgttcctgagaagagtatcactgcagcatatggagattcggattatggttctgat
ctgtccaggcgttctgcctttggagtaggaagaggaggtgagagatttaaggaacagggg
ttcgataaaccttggtatgattctgggactggtaaaatattgagccaaagaagcggcttg
gacattaagcatgggttccaaagtatatcccaaaaatctgcaacctctgatgcacatcca
caactgatacagtccttgccaaatagaaccagtactttgactgataggagctggaagaat
tctgaggaagaggagtacatgtgggatgatgtaaacagtgcagctaaagaccggtgggca
tctgaggattcagataaatctgacctagaaaatcaactgaggagaccacaaagcataagg
gaggtcgtattaagggctgatagtgaagcctcagctgattctctttcaggcgacgagcga
ggccaaacgtcttttgggaatcaaaattcagcaatgtggtcgagggattcacatgcttta
gatggagctaggcattcatcttctcttcgaagtgctccagttcatccagaaggctatcaa
acttctttcagttcgttgtcaaaagctgcaaattcaataggtaggacatctttcaagtca
cagacaggttcagtccatgttggagcgccaaattttgtgccaatgaatgcaactttagag
tccaggggatccatagtgcaacagcgagaaactctcagagctgcctctccctctgctcac
tcgccaatgcatcagcatcctccatccccatcagtcataacaagcaacactaatcaaata
gttaacagtctcggtgagcagtaccagccgcagaccacttctcgttctgatccaagaata
tcccaattctcaaggaggtcaaatcttgatcctcgtaaccagttttcccaggaatctctg
gcaatgccatctcggaatgctgtttcagttaattcacaaagacaacagcctccaaatttg
cagagtgcttctaccttggcctcctctcttcagttgaggcatgatgttcagcaggaaagc
ctggaatctgaatattctggtcaaacccagaattcagcagttcctcagatttcaggtttt
cctaatccctctagcactagcagtttgttggctgctgttttgaagagtggaattattggt
agtaaatcaagttcaggtacaacaccgagttctcttgataagggtgctctgtcatcccaa
gccagtgcacagcctcctttaccaagtggtcttcctcccgcccagttttccccagctggg
cccaggattccaccggcctctatctctagtctgtcgttggacaaaaatgcttcaagcact
ccaaattataactcccagagaaatgtagaacagccaccattgccatctgggccacctcca
actcttgtagagagtgcatcactgcagcctttgaatgcaccaaatactgcttctaatccc
ctgtcaagcattttgagtacgttggtagcgaaggggttgatatctgcatcaaagaaggag
tcccctacttatactccttcggatacaccccctcaaacgcagaaccatattccaccagca
agctccatgtcaactcctgctttatctgctccaatatcctcatccattcctttcttggct
ccgaaggccgagatttctctctcaaaacctgctgctaaaacccctgatgccttacttcgg
tccaccaaagaagaggcaaaaagtctcattgggcttgcgtttaagccagatgtgattcgg
aagtcccatcctgatgtgatcggtgaacttcttgatgacgttccacatcagtgtggcata
tgcggttttggacttaaactccaagagaaactggatagacacttggagtggcacgcattg
agaaatccagatgtcaaactgttgaataattcaagaaagtggtatttaaattctggagaa
tggattgctggatttggttgcctcccttgtgataaatccaaagggacaaccggaggttct
aatgaaacatcagaatgtaccgaggccatggttcctgcagatgaaagtcaatgtgtatgt
gttttgtgtggtgagctttttgaagacttctacaatgaagaaagtgacaaatggatgttc
aaaggtgctgtttacatgagtattccaggtgaaggtggtattcagggtccgatagtccac
aagaactgtatttcagaaagttcttgtcaagagttgggacttgcctag
DBGET
integrated database retrieval system
