Nicotiana tabacum (common tobacco): 107817723
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Entry
107817723 CDS
T04643
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 15-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107817723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
107817723
03019 Messenger RNA biogenesis [BR:
nta03019
]
107817723
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107817723
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107817723
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
107817723
NCBI-ProteinID:
XP_016499077
UniProt:
A0A1S4CCY5
LinkDB
All DBs
Position
Un
AA seq
690 aa
AA seq
DB search
MFPGQNPRPQRPSQFHTNGIAPSAPLQIMGNPGSFMQNPMQLQPQMAIPNINSNTQFSPQ
QLFAFQMNQMNNVNSQHPKGQVLAQNVVNPPQFLNQNVAMQNLNQLLQLQMAMQMPGFAQ
LVPGNVPLYPNQVSQGIGLQNPNFAMNGHLGLMNASGTVQQSMNGNLSKQMANATRQLQG
QSPLMNSFGTVQQPQTQNFSVPASANLQVSQGMRPQSSNFVMNAHMGPVNANGVVQQSKN
GFPKQMSNVTQQLQGQLPLMNPFGFVQQPQAQNFNTPASANTQVCQGMGPQISNFAMNAQ
LGLLNGNGAVQQSMNGLFEQMPNATQQLLGQLPPINPFGFVQQPQTQNFNAPASANTQAN
PEGVGGLNKSIGNQQNSYNSNFSRNQKHGAKSMKSQFGKGKFSPHSKSLEKGHHRKGEKK
SFLANSVKPEMEKKRSLLVTYSAQEIRRWREERRKNYPSKSNLEKKPAEKRAETDDSSSA
AKLRRQQLKEILAKQAELGCEVAEIPSSYLSDSEKQGDGREQKRPLSRKERFQKKFNKRE
RFNRNDRFSKKRRFGNSDSSITRDQNASTAGQVTETAREPTLLQKLLSSDIRRDKRHLLQ
VFRFMTMNSFFKDWPEKPLRFPQVILKETGQEIEAAEEIYDAIDATVEKSANDSDNDEEN
NIPEFAEAVSELQENSSNSESVKLEGQITN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctggtcaaaatccaaggcctcagcgcccttctcagttccataccaatggaatt
gcaccttcagctcccctgcagattatgggtaacccaggaagctttatgcaaaaccctatg
caacttcagcctcagatggcaattccaaacatcaactcaaatacccaattttcccctcag
cagcttttcgcgttccaaatgaaccagatgaataatgttaactctcaacatccaaaaggt
caagtattggcccaaaatgttgttaacccacctcaattcttgaaccagaatgttgcaatg
caaaatttgaaccagcttctccaattacaaatggctatgcaaatgccaggttttgctcag
cttgttcctgggaatgttccgttgtatccaaatcaggtgtctcagggtattggacttcaa
aatcctaactttgctatgaatgggcatttgggtcttatgaatgccagtggaactgtccag
cagtccatgaatggaaatttgtctaagcaaatggctaatgcgactcggcaattgcaaggg
cagtcgccactgatgaactcttttggcactgttcagcagccacaaactcagaacttcagt
gttcctgcttctgctaatttgcaggtttctcagggtatgaggcctcaaagttccaacttt
gttatgaatgcgcatatgggtcctgtgaatgccaatggagttgtccagcagtctaagaat
ggttttcctaagcaaatgtctaacgtgactcagcaattgcaaggccaattacctctgatg
aatccttttggctttgttcagcagccacaagctcagaacttcaatactcctgcttctgct
aatacacaggtgtgtcagggtatggggcctcaaatttccaactttgctatgaatgcacaa
ttgggtcttttaaatggcaatggagctgtccagcagtctatgaatgggttgtttgagcag
atgcctaatgcaactcagcaattgctaggccagttgcctccgataaatccttttggcttt
gttcagcagccacaaactcagaacttcaatgctcctgcttctgctaatacacaggcaaac
cctgaaggtgttggtgggcttaacaaatcaataggcaaccagcaaaattcttacaatagt
aacttctcaaggaatcaaaaacatggcgctaaatctatgaagtcccagtttggcaaaggg
aagttctcacctcatagtaaaagcctagaaaaaggccatcacagaaaaggggagaaaaaa
agttttcttgctaattcagtgaaacccgagatggagaaaaagaggtctctcttggtgact
tattcggcccaagaaatccgacggtggcgggaagaacgccgtaagaattacccctcaaaa
tcaaaccttgagaagaagccggcagagaaaagggcagagactgatgatagttcaagtgct
gccaagttgcgccgtcagcaacttaaggaaattctggccaagcaggctgagttaggctgt
gaagttgcagaaataccatcatcctatctatcggattctgagaaacaaggggatggaagg
gagcaaaaaaggccattgagtagaaaagagaggttccaaaaaaagttcaataaaagagaa
agattcaatcgaaatgaccgcttctccaagaaacgaagatttggaaactctgactcatca
attactcgtgatcaaaacgcttctactgcaggtcaggttacagaaaccgcaagagaacca
acactactacagaaactattgagttcagatattcggagagataaacgccacctattgcag
gtctttaggttcatgaccatgaattctttctttaaagattggcctgagaaacccctgaga
tttccccaagtgatacttaaggaaacaggacaagaaattgaagctgctgaagaaatatat
gatgctatcgatgcaaccgtcgaaaaatcagcaaatgacagtgacaatgatgaggaaaat
aatattcctgaatttgctgaagcagttagtgagttacaagaaaatagtagtaactctgaa
agtgtcaagctggagggacaaatcactaattag
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integrated database retrieval system
