Nicotiana tabacum (common tobacco): 107819159
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Entry
107819159 CDS
T04643
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107819159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107819159
Enzymes [BR:
nta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107819159
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107819159
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107819159
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
107819159
NCBI-ProteinID:
XP_016500732
UniProt:
A0A1S4CHP9
LinkDB
All DBs
Position
Un
AA seq
841 aa
AA seq
DB search
MAKTSKMVPQKEAASSSQLACGKTSVEPRLEECIPGGLGKYAVMRPLSGEEETSILVSKS
AKDKRRKKTSTSEDPEPKKKKARKLKKNIILLTEDYVRRLMEEEEEEEKDDSGMGKDFGE
VPESLRIEDASHHNEPTVGTAVKASLEPPRDGENAPNDPLEAIEIVGSPLLLSFSEEMIQ
EARALKTPSIEGTHGREDLFRDYFTRVEDATGLSDLEASMLNREEFSRSRAELSRYEADI
QRLTEERNALNLLGGQKKKRSRTSEPTEGRKDRAIPREGRHDEGGDLGVERKYRIQSDKK
VAICSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHERAASAVNDNGN
AEEELFGRFNSTGSGVNMSLTSSQSSCSLTNGTAPLYPAAVAQRNGGETWFEVGHSKTYT
PSADDIGHVLKFECAVIDAETKLPVGHASTVLTSRVIPAPSPTPRRLISVNGLDIPVHLD
LDSRLSSSGTFTVLSYNILSDAYATNELYSYCPSWALTWTYRRQNLLREIIGYRADIVCL
QEVQSDHFEEFFAPELDKHGYQALFKRKTAEVFGGNINTIDGCATFFRRDRFAHVKKYEV
EFNKAAQSLTEALVPSAQKKTALSRLVKDNVALIVVLEAKFNNQGIDNPGKRQLVCVANT
HVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVDPM
HPDLAMDPLGILRPATKLMHQLPLVSAYSSFARMPVVLGLEQQRRRMDPSTNEPLFTNCT
RDFIGTHDYIFYSADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRTR
R
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaacatcgaaaatggtaccacaaaaagaagctgcttcatcttcccaattggcc
tgcggaaaaacgtcggtggaacctcgtcttgaggaatgcattcctgggggcctgggaaag
tatgcggtcatgaggcccctatctggtgaggaggagacttcgatcctggtatcgaaatcg
gcgaaggacaaaaggaggaaaaagacctcaacctccgaggatccagaacctaagaagaag
aaggctcgtaagctgaagaagaacatcatccttctgaccgaagactatgttcgacgtcta
atggaggaagaggaagaagaggaaaaagacgactccgggatgggaaaagactttggcgaa
gtccccgagtcattgaggattgaagatgcctcccaccataatgagccaacggtgggtacg
gctgtaaaggctagtctcgagccccctcgagatggagagaatgcaccaaatgatccactc
gaggcaatagaaattgtaggctcacctctgctcctctcgttttctgaggagatgattcaa
gaggctcgggccttgaagaccccctccatcgaaggaacccacggaagggaggacctcttc
cgtgattactttactagggtcgaagatgctaccggcctgagcgacttggaggcctcaatg
cttaatcgggaagaattttctcggtctcgagctgagctgagtcggtatgaggctgacatt
caaaggcttaccgaggagaggaatgccctcaaccttctcggtgggcaaaagaagaaaaga
tcaaggacctccgagccgacagaaggtcgaaaggatcgagcaattccacgagaaggtcga
catgatgaaggcggagatcttggggtggaaagaaagtaccgcatacaaagtgataaaaaa
gttgccatctgcagcgtccacccatccgagcaagctacattgcaatgcctaggatgtgtg
aaggccaaaatccccgttgccaagagttatcattgctcgccaaaatgtttctcagatgca
tggcagcatcatcgtgttctgcatgaacgtgctgctagtgctgtgaatgacaacggaaat
gcggaggaagaattatttgggcgattcaatagtacaggatctggtgttaatatgagcttg
acttcttcgcaatcaagctgtagcttgacaaatggaacggcaccattatatcctgcagct
gtagctcaaagaaacggtggtgaaacttggtttgaagttggacactctaaaacttacaca
ccatctgcagatgatattggtcacgtccttaaatttgaatgtgctgtcatcgatgcagaa
accaaattacctgttggacatgctagtaccgtgttaacgtctcgagtgattccagctcca
tctcctactccacgtcgcttgatttcagttaatgggcttgatataccagtgcatctggac
ttagatagtcgtttatcatcttcaggaacttttactgtgctttcatacaacattctgtct
gatgcatatgcaacaaatgaattgtacagttattgtccctcttgggctcttacttggact
tatcggagacaaaatctattgcgtgaaataattggctatcgtgctgacattgtttgcctt
caagaggttcagagtgatcactttgaggaattcttcgctcctgagctggacaaacatggt
tatcaagctctgttcaaaaggaaaacagctgaggtgtttggtggaaatataaataccatt
gatggttgtgccacatttttccgccgagatagatttgcacatgttaaaaaatatgaggtt
gagttcaataaagctgctcaatctttgactgaagccttagttcctagtgcccaaaagaag
accgcactaagtcgtttggttaaggataacgttgcacttattgtggttctggaagcaaag
ttcaataaccaggggattgacaaccctgggaagcgccaacttgtttgtgtggccaacaca
catgtaaatgttcatcaagagttaaaggatgttaaactttggcaggttcacacactttta
aaaggactagagaaaattgctgctagtgctgacattccaatgctagtctgtggtgatttt
aattcagtccccggaagtgctcctcatgcacttctggcaatggggaaagttgatccaatg
catccagatttagcaatggaccctcttggtattttgcgtccagccacaaagttgatgcat
caactgccattggtcagtgcttactcatccttcgctcgaatgcctgtggttcttggacta
gagcagcaacggaggaggatggatcctagtaccaatgaacccttgtttacaaactgcact
agagattttattgggactcatgattatatattctattctgcggactctctaactgttgaa
tcgttgttggagctcttggacgaggaaagcttgagaaaagatacagcacttccttctcca
gagtggtcctccgatcatatagcactcttagctgagtttcgctgcaagcctagaactaga
cgctga
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