Nicotiana tabacum (common tobacco): 107819808
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Entry
107819808 CDS
T04643
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107819808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107819808
03041 Spliceosome [BR:
nta03041
]
107819808
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107819808
Spliceosome [BR:
nta03041
]
Complex B
Other components
Prp19-related factors
107819808
Complex C
107819808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
ARM_TT21_C
TPR_19
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
107819808
NCBI-ProteinID:
XP_016501447
UniProt:
A0A1S4CJP3
LinkDB
All DBs
Position
Un
AA seq
914 aa
AA seq
DB search
MSIPKELYPSQDDLPYEEELLRNPFSLKLWWRYLVARADSPFKKRAVIYERALKALPGSY
KLWHAYLRERLELVRNLPVTHSQFQTLNNTFERALVTMHKMPRIWIMYLVSLTEQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQRGIPIETSLRVYRRYLKYDPSHIEDLLEFL
LNSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IKKFTDEVGRLWTSLADYYIRRKLVEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
ALKMEEMSDSEVEDEETNSEVGVEEDVDEEDDRLNVAKLEKKLRGFWLNDDKDVDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAVGK
PHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDHLASVWCEWAEMELRHRNFKGAL
ELMRRATAEPTVEVKRRVAADGNEPVQMKLHKSLRLWLLYVDLEESLGTLESTRAVYERI
LDLKIATPQIIINYAVLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEETPADAVKPLYLQYAKLEEDHGLAKRAMRVYDQATKAVPANEKLS
MYEIYIARAAEIFGVPRTREIYEQAIESGLPDKDVKVMCLKYAELEKSLGEIDRARALYK
HSSQFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRVKRSVSASYSQTHFILPEYLMQKD
QMQTLEEAKDVLKKAGVADDEMAALERQLVPPEDETKGKEQSRVVGFVSAGVVESNGQKV
TTNNEDIELPEESDSEEEEKVEIAQKDVPAAVFGGLIRKREEGDEAEDDSAAKNKDNDGH
LGALERIKRRRQGS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatccccaaagagctctaccctagccaagatgaccttccgtacgaggaagagctc
ctccgcaacccgttcagcttgaaactgtggtggcgttatttagtggcacgagcagattcg
ccattcaagaaaagagcagtaatttacgaacgagctctaaaagctctacccggaagttac
aaattatggcacgcgtatctccgcgaacgcctcgaattagttcggaatcttccagttact
cactcgcagtttcaaaccctaaacaacactttcgagagagctctcgttacgatgcacaaa
atgccgcggatttggatcatgtacctggtaagtttaactgagcaaaagctcgttacccga
acccgacgcacttttgatagagcattgtgtgcgttgcctgttactcagcatgataggatt
tgggaaccttatttagtgtttgttagtcaaaggggaattcctattgaaacttcacttagg
gtttataggaggtacttgaagtatgacccttcacatattgaggatttgctcgagtttttg
ttgaattccgagctgtggcaggaggcggccgagaggttagctggtgtattgaatgatgat
cagttttattctattaaagggaagactaaacataggctctggttggagttgtgtgacttg
ttaacacagcatgctactgaaatttcgggtttgaatgtggatgcgattattcgaggaggg
attaagaagtttacggatgaggttgggaggctttggacatcattggcggattattacatt
aggaggaagttggttgagaaggcgagggatattttcgaagaagggatgaccactgtggtc
actgttagggattttagtgttatttttgatgcatactcgcagtttgaggaaagtatgctt
gccttgaaaatggaggagatgagtgacagcgaggtggaggatgaagagactaacagtgag
gttggggtggaggaagatgtggacgaggaggatgatcggttgaatgtggcaaaattggaa
aagaagcttagagggttttggttaaatgatgataaggatgttgatttgagattagcgagg
ctagaacatcttatggataggaggccggaactcgcgaatagtgtcctactaaggcaaaat
ccacataacgtggaacaatggcatagaagggtaaaacttttcgaagggaatccgacgaag
caaatattaacatacactgaggcagttagaactattgacccaatgaaggctgtgggaaag
ccacatactttgtgggttgcatttgcaaaactttatgaaaaccataaggatattgcaaat
gcaagagtcatctttgataaggcagttcaggtgaactacaaaactgtggatcatctggct
agtgtttggtgtgaatgggcagagatggaactacggcacaggaatttcaagggtgctctg
gaactgatgagacgtgccactgctgaaccaactgttgaggtcaagcggagagttgctgct
gatggaaatgaaccagtgcagatgaagctacacaaatctctaaggctttggttattgtat
gtggatttggaggagagtctaggaaccctagagtcaactcgtgcagtatatgagagaatt
ttggatctgaaaattgctacgccccagattataataaactatgcagtacttctggaggat
cataagtactttgaggatgcattcaaggtttatgagaggggtgtgaagatcttcaagtac
ccacatgtaaaggatatatgggttacctatctttccaaatttgtgaagagatatgggaag
tcaaagctggaacgagctagagagttatttgagcatgccgtggaagagactcctgctgat
gctgtgaagccattgtatcttcaatatgctaaattagaggaagaccatggtcttgccaag
cgggctatgagagtgtatgatcaagctacaaaagctgttccagcaaatgagaaattgagc
atgtacgagatttacatagcccgggcagctgagatatttggtgttccaagaacaagggag
atatatgaacaagcaattgagtctgggcttccagacaaggatgtgaaagttatgtgctta
aagtatgctgaactggagaagagcctaggagagatcgaccgtgcccgtgcactatacaaa
cactcatcacaattcgcagaccctagatcagaccctgatttctggaataagtggcatgag
tttgaggtgcagcatggaaacgaggataccttccgcgagatgctccgtgtgaagaggagt
gtatctgcaagctacagccagacacattttatcctacctgagtatctcatgcaaaaggat
cagatgcagacccttgaggaagcaaaggatgtgttgaaaaaagctggtgttgctgatgat
gagatggcagctcttgagaggcagttagtgcccccagaagatgaaacaaagggcaaagaa
cagagtcgggtagttggatttgtaagtgcaggagtagttgaatcaaatggacagaaagtg
acaacaaacaatgaggatattgagctacctgaggaaagtgactctgaagaggaagagaag
gttgagattgcgcagaaggatgtccctgctgcagtttttggaggtttaatccgtaagagg
gaagaaggtgacgaagcagaggacgactctgctgccaagaacaaagataatgatggtcat
cttggtgctctagaaagaataaaacgaaggagacaaggctcttag
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