Nicotiana tabacum (common tobacco): 107819877
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Entry
107819877 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107819877
03009 Ribosome biogenesis [BR:
nta03009
]
107819877
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107819877
Spliceosome [BR:
nta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107819877
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107819877
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ARTD15_N
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107819877
NCBI-ProteinID:
XP_016501539
UniProt:
A0A1S4CKU4
LinkDB
All DBs
Position
12:complement(5290958..5299050)
Genome browser
AA seq
740 aa
AA seq
DB search
MADFVFEQPSDEEVEYEENDDEEEEQEEAEDNEDADNKPKKKTQSPWDFSSYSESVADEH
NRRSTTSIDFKISKARQQLSEPIAKPVEEDSDPDDSEPHRQEEYRPEDGDDEVDTNVGEK
KPFFASSEGVSFQANSFMELHISRPLLRACEALGYSKPTPIQAACVPLALTGRDICGSAI
TGSGKTAAFALPTLERLLYRPKNRPAIRVLILTPTRELAVQVHSMIGKLAQFMTDIRCCL
VVGGLSTKVQEQALRSMPDIVVATPGRMIDHLRNSKSVDLDDLAVLILDEADRLLELGFS
AEIHELVRLCPKRRQTMLFSATMTEEIDELIKLSLNKPLRLSADPSTKRPATLTEEVVRI
RRMREGNQEAVLLALCTKSFTSKVIVFSGTKQAAHRLKIIFGLLGFKAAELHGNLTQAQR
LDALEVFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGY
AVTFVTDNDRSLLKAIVKRAGSRLRSRIVAEQSIAKWAQVIEQLEDQVAAIMQEEREEMA
LRKAEMEAAKAENMIAHRDEIYSRPKRTWFVTEKEKKLVQKAAKESSAKENGSESKVMSA
EQAEDLKMKEKRKREREKNLPRKKRRKLEAAREQLEDEDDLDEGKGKTKKDKEKSGISLV
DLAYRRAKAVKAVNKAVDAGKIVRKTGKKLKPKTRVSESRRDEMQDLFQNDMSEKKQRKP
HHGGMKKKSSFKSKSRYKRR
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttgttttcgaacaaccaagtgacgaagaagtggagtacgaggagaatgac
gatgaagaagaagaacaagaagaagcagaagataacgaagatgccgacaacaaacctaag
aagaagacacaatctccatgggatttctcttcttattccgaatccgtcgccgatgaacac
aatcgccgtagcacgacgtctattgattttaaaatatcaaaagcccgtcaacaattgtct
gaacctatagctaaaccagtcgaagaagattctgatcccgatgactcagaacctcaccgc
caagaagagtatagacctgaggatggtgatgatgaagtagataccaatgttggcgaaaaa
aaaccattttttgcctcatcagaaggagtttcatttcaagccaattcgtttatggagctc
catatctcaaggccgttgcttcgagcttgtgaagcattgggttacagtaagcccaccccg
attcaggctgcttgcgttccgctggccttaacgggccgagatatttgtgggagtgctata
acaggatctggaaagacagctgcctttgctttaccgacactggagagactgttgtaccgt
ccaaaaaataggcctgcaattagggttcttattcttactccaacaagggagttggctgtt
caggttcatagtatgataggtaaacttgcgcagtttatgacagatatcagatgttgtctg
gttgttggtggtctgtcaaccaaggtgcaagaacaagccttgagatcaatgcctgatatt
gtcgtggcaactccaggacgtatgatagatcatctacggaactccaagtcagttgatttg
gatgatcttgcagtattgattcttgatgaggccgatcgactactggagctgggtttcagt
gctgaaattcatgaactggttagattgtgtccaaagcggagacagaccatgttgttttct
gcgacaatgactgaggaaattgatgagcttatcaagctatctctgaataaacctttgcgc
ctgtcagctgatccatcaacgaaacggccagcaacattgactgaagaggtagttagaata
cggagaatgcgtgaaggaaatcaagaagctgttcttcttgcattgtgcaccaagagcttc
acctccaaagtgattgttttcagtggtacaaagcaagcagcacataggttgaaaattata
tttggtttacttggcttcaaagcagctgagctgcatggaaatcttacgcaagcgcaacgt
ctagatgctttggaagttttcagaaaacaggaagtggattttctgattgcaactgatgtt
gccgctcgtggccttgacattattggtgttcaaacggttataaattatgcctgtccacgt
gatcttactagttatgttcatcgagtgggccgcacggctagagctggtagagaagggtat
gccgttacatttgtcacagacaatgataggtctcttctaaaagccattgttaaacgagct
ggttcaaggctgaggagtcgaattgtagcagagcaatcaatagctaagtgggcacaagta
attgaacagctggaagatcaagtggctgcaattatgcaagaagagagggaagagatggca
ctaagaaaagctgagatggaagcagctaaggctgagaatatgattgcccacagggatgag
atttattcacgccccaaaagaacatggtttgtcacagaaaaggagaaaaagcttgtccag
aaggcagcaaaggaatcatcagctaaagaaaatggttccgaaagcaaggtgatgagtgcc
gaacaagcggaagacctgaagatgaaggagaagaggaagcgagagcgggagaaaaatctg
ccgaggaagaaaaggaggaagctggaggctgcccgagagcaattagaagatgaagatgat
ttagatgaaggcaaagggaaaacaaagaaagacaaagagaaatctgggatttccctagtt
gatcttgcttatcgtcgtgcaaaagcagtcaaggctgtgaacaaggcagttgatgctggc
aagattgttagaaagacggggaaaaaattgaaaccaaaaaccagagtatctgaatcaagg
agagatgaaatgcaggatctttttcaaaatgatatgagtgagaaaaaacaaaggaaacca
catcatgggggtatgaagaagaagtcttcattcaagagcaagtcacggtacaagaggagg
taa
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