Nicotiana tabacum (common tobacco): 107820024
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Entry
107820024 CDS
T04643
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107820024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107820024
03009 Ribosome biogenesis [BR:
nta03009
]
107820024
04131 Membrane trafficking [BR:
nta04131
]
107820024
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nta04147
]
107820024
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107820024
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107820024
Membrane trafficking [BR:
nta04131
]
SNARE
SNARE associated proteins
Others
107820024
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107820024
Exosome [BR:
nta04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107820024
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
AAA_18
Parvo_NS1
nSTAND_NTPase5
ATPase_2
ABC_tran
Viral_helicase1
NB-ARC
NACHT
AAA_7
TsaE
IstB_IS21
DUF815
Vps4_C
AAA_lid_PRS2_C
Zeta_toxin
AAA_24
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
107820024
NCBI-ProteinID:
XP_016501716
UniProt:
A0A1S4CL01
LinkDB
All DBs
Position
5:128282029..128287473
Genome browser
AA seq
808 aa
AA seq
DB search
MTNKAESSDSKGTKRDYSTAILERKKSPNRLVVDEAINDDNSVVALHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVSREDENRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERIGKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSEN
PEAMEEDVDDEVAEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFSE
TSTAGGATGTADPFATSAGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaaagctgaatcctccgattcgaaagggacaaagagggactatagtacggcg
atattggagaggaagaagtcgcctaatcgccttgttgttgatgaagcaatcaacgatgac
aactctgttgttgctcttcaccctgatactatggagaagcttcagctttttcgcggtgac
actatcctgatcaagggtaagaagagaaaagatacaatctgcatagctcttgctgatgac
acctgtgacgagccgaagatcaggatgaacaaggttgtcagaaataacctaagggttcga
cttggtgatgttgtctctgtgcatcagtgtcctgatgtcaagtatggcaaacgtgtacac
attcttcccattgatgataccattgaaggggtcactgggaacctcttcgatgcttactta
aaaccctatttccttgaagcatacagaccagtgaggaagggtgatcttttcctggtaagg
ggagggatgagaagtgtggagttcaaggttattgagactgatcctcctgaatattgtgtt
gttgcccctgatactgagatattttgtgagggtgaacctgtgagtagggaagacgagaat
aggctagatgagatcggctatgatgatgttgggggcgtgcgtaaacaaatggctcaaata
cgggagcttgttgagcttccactaaggcacccacaactcttcaaatccattggtgtcaag
cctcccaaaggaattctgttgtatggacctcctggatctggaaagactttaatagcccga
gcagttgcaaatgagactggtgcgttcttcttctgtattaatggtccagagatcatgtca
aaattggctggagaaagtgaaagcaatcttaggaaagcatttgaggaagctgaaaagaat
gcaccatcaatcatttttatcgacgaaattgactcaatagctcctaaacgtgagaagaca
catggagaggttgagaggaggattgtctcccagcttttgacattgatggatggactcaaa
tcacgtgcccatgtaattgttatgggtgccactaatcgccccaatagcattgatcctgcc
ttaagaaggtttggcaggtttgacagagaaatagacattggtgttccagatgaagtgggg
cgtctcgaggtgctccgtatccatacgaagaacatgaagcttgctgaagaagttgattta
gaaagaattggcaaggacacacatggttatgtcggtgctgatttagcagctttgtgtacc
gaggctgcacttcagtgcatcagagagaagatggacgtgatagatttggaggatgagacc
attgatgcagagatactgaactccatggctgtgacaaatgagcacttccaaactgctctt
ggaacgagcaatccctctgccttgcgtgaaactgttgttgaagttcccaatgtctcttgg
gaggacattggaggccttgagaatgtcaagcgtgagctccaagagactgttcaatatccg
gtggaacatcctgagaaattcgagaagtttggtatgtctccatcaaagggagtcctgttc
tacggcccacccggatgtgggaaaactttgcttgcgaaggccattgcaaatgaatgtcag
gccaacttcatcagtgtcaagggtccagaattgcttaccatgtggtttggagagagtgaa
gccaatgttagagaaatatttgacaaggctcgacagtctgctccgtgtgtcctattcttt
gatgagctggattctatcgccacacagagaggaagtagtgtgggagatgctggtggagct
gctgatagggttttgaatcaactccttactgaaatggatggcatgaatgctaagaagaca
gtattcattattggcgcaaccaacaggcccgacattattgatcctgcacttctacggcct
ggtcgtcttgatcagttgatttatattcctctccccgatgaagactctcgtcaccaaatt
ttcaaggcgtgcctaagaaagtcacccctttctaaggatatcgatctaagagctctagcg
aagtacacacagggcttcagtggagctgacataacagaaatctgtcaacgcgcttgcaaa
tacgctatcagagaaaacattgagaaagacattgagagggagaaaaggagaagcgagaat
cctgaggccatggaggaagacgttgatgatgaggtagcagagatcaagcctgctcatttt
gaggaatcaatgaagtatgctaggaggagtgttagtgacgcagatattcgcaagtaccag
gcctttgctcaaacgttgcagcagtctagaggttttggtactgaattccgattctcagag
acgagcacggcaggaggagcaactggaactgctgatccttttgcaacttcagctggtgga
gcagatgaagatgacctgtatagttag
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