Nicotiana tabacum (common tobacco): 107820142
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Entry
107820142 CDS
T04643
Name
(RefSeq) putative vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nta04131
]
107820142
Membrane trafficking [BR:
nta04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
107820142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
PH
Motif
Other DBs
NCBI-GeneID:
107820142
NCBI-ProteinID:
XP_016501842
UniProt:
A0A1S4CKT0
LinkDB
All DBs
Position
Un
AA seq
1287 aa
AA seq
DB search
MARAKAVIQIVAYVTGDVELVNMQLKPEALNALKLPVKVKAGFLGSVRLKVPWSRLGQDP
VQVHLDRIFLLAEPATQVEGSTEDAVQEAKKSRIRDMETKLLESRRILQTEMNKSWLGSL
INTVIGNLKLSISNIHIRYEDLESNPGHSFAAGMTLEKLSAMTVDESGSETFVTGNALDF
IQKSVELERLAVYFDSDISPWHIDKPWADLLPLEWVKIFRYGTDNGKPADGHIKEHSYIL
QPVTGKAKFSKQRPNPSLDNTEPLQKAVVALDDVTLCLSKNGYRDLLKLAENFAAFNQRL
KYAHLRPHVPVRSDPKSWWKYAYQALSDQIKKASGKLSWEQVLRYTRLRKKYISLYASLL
KSDPDRIVIDDSKDLEELDHTLDAEIILQWRMMAHKFVQQSVESDSYLKKQKSKKSWWSF
GWTSQSVEDGSEQAGFTEEDWERLNNIIGYKEGEEEPLLATHDRRDVPHTTLEVHMKHNA
SKLSDTHNCLADLSCDNLDCYIKLYSEAKVFDVKLGSYQLWSPNGLLAESATVSDSLVAA
FCYKPFDSNIDWSLAAKASPCYVTYLKDSIDQIINFFESNAAVSQTIALETAAAVQMTID
EVKRTAQQQVNRALKDQSRFFLDLNIAAPKITIPTDFSPDNTHSTKLLLDLGNLVISTKD
DSEFIAPEEMNMYVQFDMVLSDVSAFLVDGDYYWSQTPTNGVGPSRSNFVAWLPVIDKCA
VVLKLQQIRLENPAFPSTRLAVRLPSLGFHFSPARYHRLMQVAKIFEGEERNDSDVYRPW
TQSDFEGWLGLLTWKGVGGREAVWQRRYLCIVGTFLYILENPGSRSYKQYTSLRGKQLYQ
VPPNDVGDEHVLAVYSAERATNVVEDANALILRCDSEDLKKTWQSHLLGAIYRASGSAPI
AGLSESSSESEDYEADHADNQDLMDLSKMESLYLTGILDELKMCFNYSPEHDQSFTKALL
AEERGLFEFRATGGRVELSIRGNDIFIGTLLKALEVEDLVCQTGISGSCYLARSFIRNVG
APPLLNDVKSQSNEFSQYDGEEEFYEASENLNDLADSPYSSGNFLSSEKTVSKAPSFNRF
AGLLPIDVHDNGTNSVKLTDTLDSFVKAQVVIYDQKSPRYTSIDTKVAVTLATLSFFCRR
PTILAVMEFVNAINVGEESCESFSDTSSSAITQHDSSKENVVDSQLFEIADVPAVKGLLG
KGKSRIIFGLTLNMARAQILLMKEDGSKLATLSQDNFLTDIKVFPSSFTIKASLGNLRIS
DDSLPSSHLYFXETKNSETLGYFFPCA
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggctcgagcaaaagcagtgatacagattgtggcatatgtgacaggtgacgtagagcta
gtaaatatgcaattaaaaccagaggctctcaatgcattgaagttacctgtaaaagtcaag
gcaggatttcttggatctgtgagactcaaggtaccatggagcaggcttggccaagatcca
gttcaagttcacctggatcgtattttcttattagctgagccagcaacccaagttgaagga
tctaccgaagatgctgtccaagaagctaagaagagtagaatacgagacatggaaacaaag
cttctggagagtagacgaatcctacagacagaaatgaataagtcctggttggggtctttg
atcaacacagtaattgggaatttgaagctttcaatttcaaatatccacatcagatatgaa
gatcttgagagcaatcctggccactcttttgcagctggtatgaccttagagaaactatca
gctatgacggtagatgagagcgggagtgaaacctttgtaactggaaatgcattggatttt
atacagaagtccgtagaacttgaacggctagctgtttatttcgattctgatatcagtccg
tggcatattgacaaaccttgggcagatttgctaccactggagtgggtcaagattttcaga
tatggaacggataatggcaaaccagctgatggtcacattaaagagcattcttacattttg
caaccagtgactgggaaagctaagttctcaaaacagcgccctaatccttcacttgataat
acggaacctctacaaaaggcagttgtggctctggatgatgtgactctttgtttgtcaaag
aatggctatagggatttattaaagttggctgagaactttgctgccttcaatcaacggttg
aaatatgctcatcttcgtccacatgtcccggtgagatctgatccaaaatcttggtggaag
tatgcttatcaagctttatctgatcagataaagaaggccagtggaaaattgtcatgggag
caggtcctgcgatatacgaggttgcggaagaaatatatctctttgtatgcttcattgctg
aaatctgatcctgatcggatagtaatagatgatagtaaagatttagaagaactggatcac
acgcttgatgctgaaatcattcttcaatggaggatgatggcgcacaagtttgtgcagcag
tcagtagagtcagattcctacctaaaaaagcaaaagtcaaagaaatcttggtggtctttt
ggctggaccagccaatcagttgaagatggaagtgagcaagcagggtttactgaggaagac
tgggagaggttaaataatataattgggtataaagaaggtgaagaagaaccactgttggca
actcatgaccggagagatgtgccacataccaccttggaggttcacatgaagcacaatgcc
tcaaagcttagtgatactcacaactgccttgctgatttgtcatgtgataaccttgattgt
tatataaagctttattcagaagcaaaggtttttgacgtaaaactaggatcatatcaatta
tggtctccaaatggccttctcgctgagagcgctactgtcagtgattccttggttgctgca
ttctgctacaagcctttcgattccaacattgactggagtttagcggctaaagcttctccc
tgctatgtgacttatttgaaggattccattgaccaaattatcaacttttttgaaagtaat
gctgctgtaagtcagaccatagctctggaaacagctgctgcagtacagatgacaattgat
gaagtcaaacgaactgcacagcaacaagtaaacagagctcttaaggatcagtccaggttc
ttcctggatttgaatattgcggctccaaaaattaccattcctacagatttctctccagat
aacactcactcaactaagctgcttcttgacttgggaaatttggtgatttctacaaaggat
gattctgaatttatcgcacctgaggagatgaatatgtatgttcagtttgatatggtcctc
agtgatgtttctgctttcctggttgatggtgattactattggagtcaaacccctacaaat
ggagttgggccatctaggtctaactttgttgcttggttgcctgttattgacaagtgtgca
gtggttctaaagcttcaacagattcggctagagaatcctgcctttccttcgacgagactc
gcagtgcgtcttccttctttaggattccatttttctcctgctcggtatcatcggttgatg
caagttgcaaagatatttgaaggagaggaaagaaatgattcagatgtttatcgtccttgg
actcaatctgattttgaagggtggttgggtcttcttacctggaagggtgttggtggtagg
gaggctgtatggcagcggagatacctatgtatagttggaacttttctttatatactggaa
aatcctggctctagatcttacaagcagtataccagtttacgaggaaagcaactatatcaa
gttcctccaaatgatgttggcgacgaacatgtgttggctgtctatagtgctgaaagagcc
accaacgttgtggaagatgcaaatgctctaatattacgttgtgactctgaagatttaaag
aagacatggcagagccacttgctgggggccatctatcgtgcatcgggatcagctccaatt
gctggtttatctgaatcatcatctgagtctgaagactatgaagctgatcacgcagacaat
caagatttaatggatctgtcgaaaatggagagtctgtatttgaccggtattcttgatgag
ttaaagatgtgcttcaattatagtccagagcatgatcaaagttttactaaggcacttcta
gctgaggagagaggcttatttgaatttcgagcaacgggtggtcgggttgagctttcaatt
agaggcaatgatatttttatagggactctcctgaaagctctggaggtagaagatttggtg
tgccagacagggatatccggctcttgttatctagcacgatccttcatcagaaatgttggt
gcacccccccttttgaatgatgtcaaaagccagagcaatgaatttagtcaatatgatgga
gaagaggagttttatgaggcatctgaaaatttaaatgacctggctgatagtccatattca
tctggaaattttttgtcatcagaaaagaccgtgtcaaaggctcctagttttaatcgtttt
gctggtcttctgcctattgatgttcatgataatggaactaattctgtaaaactgactgat
acattagatagttttgtgaaggctcaagtggttatttatgaccagaagtcacctcgctat
actagcattgatacaaaggtagccgtcacacttgctaccttgtcttttttctgtcgtagg
ccaacaatattggcagtaatggaatttgtaaatgccataaatgtgggggaggaaagctgt
gaatctttcagtgacacttcttcatcagccattacacaacatgatagttccaaggaaaat
gtggttgattcacagttgtttgagatagctgatgtgcctgcagtgaaaggtttgcttggg
aaggggaagtctagaattattttcggtctgacactgaacatggctcgtgcccagatcttg
ctgatgaaagaggatggatctaagctcgctaccttgtcccaggataattttcttactgat
atcaaggtgtttccatcttcttttactataaaggcatctcttggaaatctgagaattagt
gatgacagcctccctagcagccacctttatttctgngaaacaaaaaacagtgaaacacta
ggttatttcttcccgtgtgcctaa
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