Nicotiana tabacum (common tobacco): 107821472
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Entry
107821472 CDS
T04643
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107821472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107821472
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107821472
Spliceosome [BR:
nta03041
]
Complex C
Other components
Step II factors
107821472
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
ResIII
HA2_N
ABC_tran
Helicase_RecD
AAA_29
SLFN-g3_helicase
ChaC
AAA_30
T2SSE
HTH_45
Arc_MA
Motif
Other DBs
NCBI-GeneID:
107821472
NCBI-ProteinID:
XP_016503393
UniProt:
A0A1S4CQ84
LinkDB
All DBs
Position
Un
AA seq
824 aa
AA seq
DB search
MQRRISPSPAVTQPRYGFHRNQPMRYRFDRPPEKPIQKPPNFIVQLCSTHRVLTRPQLNS
LISKLPFTPQNSFVFSSGFVVGTLLYEQWNQALDVTVELWKLKLKSEHFYIPFVKENIEV
SSDKEELNNSLKGVFLDHLYGILDGVLVQKWEQKLGFLMNEIDGVSSLLRKHNRIGVYSD
LCKKKKGLEAERDLIKLRIDEFKNGIKCIIQYLEEEEKGFVENEEGFRVLKFGGEEFDWD
RIHCLMMRECRRLDDGLPIFAFRQQILKQIHCQQVTVLVGETGSGKSTQLVQFLADSGIA
GNGSMICTQPRKLAANSLSRRVREESQGCYDDNSVTCNPSYSSCQQFDSKIMFMTDHCLL
QHYMGDKTLSKISCIIVDEAHERSLNTDLLLALIKNLLHQRFDLRLIIMSATVNADQLAD
YFFGCGTFHVAGRTFPVDIKYVPCESDVHPAVGAIAPYVHDVIKMVTEIHRTEGEGAILA
FLTSQSEVEWACDKFQAPLAIVLPLHGKLSYDDQNRVFLFYPGRRKVIFTTNLAETSLTI
PGVKYVVDSGVVKESRFEPGTGMNVLRICSVSQSSANQRAGRAGRTEPGKCYRLYSQSDF
EGMPCHQEPEICKVHLGVAVLRILALGIKNVQDFDFVDAPSPKAIEMATRNLVQLGAVTQ
RDDDTYVLTAEGRKLVKLGIEPRLGKMILGCFDQRMGREGVVLAAVMANSSSIFCRVGSE
GDKLKSDRLKVQFCHPNGDLFTLLSVYREWEAVSREKKNSWCWDNSINAKSMRRCQETVQ
ELEACLQNELNMIIASYWQWDPQVHTKHDEVLQSIILSSLAENV
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagacgaatttcgccttcaccggcggtgacccaaccccgatatgggtttcaccgg
aatcagcctatgcgttaccggttcgaccggccaccggaaaaaccgatacaaaaaccgccc
aatttcatagtccaactctgttcaactcacagggttctcaccaggccacaactaaactct
ctaatttcaaaattaccattcactcctcaaaactcctttgtgttttcctccggtttcgtc
gtcggaaccctactgtacgagcagtggaaccaggcgttagacgtgacggttgaattatgg
aagctaaagttaaaaagtgagcatttttatatcccgtttgttaaagaaaatattgaggtt
tcatctgataaagaggagttgaataatagtttaaagggtgtttttttagaccatttgtat
gggattcttgatggggttttagtgcaaaaatgggagcaaaagttgggttttttaatgaat
gaaattgatggggtttcaagtttgttaaggaaacataataggattggagtttatagtgat
ttgtgtaagaaaaagaagggtcttgaagctgagagggatttgattaaattaaggattgat
gagtttaagaatgggattaaatgtattattcaatatttagaggaggaggaaaagggattt
gttgagaacgaggagggatttagggtgttaaaatttggcggggaagaatttgattgggat
agaattcattgtttgatgatgagagaatgtagaaggcttgatgatggcttgcctattttt
gctttcaggcagcagattcttaagcaaattcattgccaacaggtgacggttttggttgga
gagactggatcaggaaagagtacacaattagtgcagttccttgctgattcaggaatagct
ggcaatggttctatgatttgcactcagcctcggaaacttgctgccaactctttatcaagg
agggttagagaggaaagccaggggtgttatgatgataattcagttacctgcaatccatca
tattcgtcttgtcaacagtttgattcaaagataatgtttatgacagatcactgcctacta
cagcactatatgggtgacaagactttgtccaagatttcatgcatcatagtcgatgaggca
catgaaagaagcctaaacactgatcttcttttagcattgataaagaacctacttcatcag
aggtttgatctgaggcttattattatgtctgccaccgttaatgcagaccagcttgcagat
tacttctttggttgtggaactttccatgtggcgggtagaactttcccggttgatattaag
tatgtcccctgtgaatctgatgtccatcctgctgtaggtgcaattgccccttatgtccac
gatgttatcaagatggtgactgagatacatagaacggagggagagggagctattctagca
ttcttgacatctcagagtgaagttgagtgggcttgtgacaagtttcaagcacctctggcc
attgttttacctttacatggcaaattatcttatgatgaccaaaaccgagtgtttctcttc
tatccagggaggagaaaggtaatattcaccacaaatcttgccgagacatcactgacaatt
cccggtgtcaaatatgttgttgattctggtgtggttaaagaaagcaggtttgaacctggc
accggcatgaatgttctcaggatatgtagcgtgagccaaagttccgctaaccagagagct
ggtcgtgcagggagaactgaacctggaaagtgttacaggctatactctcaaagtgatttt
gagggaatgccttgtcatcaggaacctgaaatttgcaaagttcatcttggtgttgcagtg
ctgaggattcttgcattaggtatcaagaatgtccaggattttgattttgttgatgcacct
agccccaaagctatcgagatggccacccgaaatctggttcaactcggagctgttacacag
agagatgatgatacatatgtattaactgcagaaggacgaaaactggtcaagttgggtatt
gaacctaggttgggcaaaatgatcctcggttgctttgatcaacgtatgggtagagaaggt
gttgtgcttgctgctgtcatggcaaattccagcagcattttctgtagggttggctccgaa
ggagacaagctaaaatctgatcgccttaaggtgcaattttgccatccaaatggtgacctc
tttactttattatctgtttacagggaatgggaggctgtgtctagggaaaagaagaatagc
tggtgctgggataatagtatcaatgccaaatccatgagaagatgccaggagactgtgcag
gaactggaagcctgtcttcaaaacgaactaaatatgatcattgccagttactggcaatgg
gatcctcaagttcataccaagcatgacgaagttttgcagagtataattctttcttccctt
gcggaaaatgtt
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integrated database retrieval system
