Nicotiana tabacum (common tobacco): 107822036
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Entry
107822036 CDS
T04643
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107822036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107822036
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107822036
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107822036
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
107822036
NCBI-ProteinID:
XP_016504008
UniProt:
A0A1S4CSC6
LinkDB
All DBs
Position
Un
AA seq
854 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNNVVGELENQIDTFEAELEGLSVKKGKQRPPRLVHLETSIVRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVES
LEDLVTVGPPGLVKGVTVASAVLSVKNSLASSPAQSSVSVTSSAQQAACVQDQADETASQ
DSSSEAVARTPPPKSSAVAASAPTTPAGSHATQGAVAALSPTSMSNAIKEDDVTSFPGRK
PSPALNETALRGVNRGSLSNQPVASITLGSGGAATGNGGLGAIPSASEVTKRNTLGSEDR
LGSNAMGQALVSPLANRMMMSQAAKATDGIGVADGANPGDATVMTGRVFSPSVGPGMQWR
PGSSFQNQNEAGQFRGRTEIAPDQREKFLQRFQQVQQQGQSNLLGIPPLSGGNLKQFSSQ
QQNPLLPQFNSQSSSVSPQLGLGVGVQASSINSVASSASLQQQPDAGHSKVEDLQQQQTL
PEDSSTDSAANPGPGKNLLNEDDMKASYGLDTPMQGGVNGSIAEPSPRPRDIDLSPGQPL
QSSQPSGSLGVIGRRSVADLGAIGDNLSASTANSGGMHDQLYNLQMLESAFYKLPQPKDS
ERAKSYTPRHPAVTPPSYPQVQAPIVNNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYL
AAKELKKQSWRYHRKYNTWFQRHEEPTVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQE
FTFEYNYLEDELIV
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgaaagctacagggtgaaatcgatcgagttctgaagaaagttcaagaa
ggcgttgatgtcttcgatagcatatggaacaaggtttacgacacggataatgcgaaccag
aaggaaaaatttgaagcggatttgaaaaaggagatcaaaaagcttcagaggtatagagac
caaatcaaaacatggattcaatcaagtgaaatcaaagataaaaaggtaagtgcctcgtat
gaacaagcattaatggatgctcgtaagcttattgagcgtgaaatggagcgattcaaaata
tgtgagaaagaaactaagaccaaagcattttcaaaagaaggtttgggtcaacaacctaag
acggacccaagggagaaggccaaatcagagacacgagattggttgaataatgtggttggg
gagctcgaaaatcaaatcgacactttcgaggctgaattggaaggactctcagttaaaaaa
gggaagcaaaggcccccaagattggtacatttggaaacatccattgttcggcacaaggct
cacataatgaaattagagttgatattaagactactggataatgatgaattgagtcctgaa
caagtcaatgatgtcaaggatttccttgacgattatgtggaacgtaatcaggaggacttt
gatgaattcagtgatgttgatgagctttatagcactttaccgcttgataaggtggagtct
cttgaagatctggttactgtcggtccacctggtcttgttaagggtgtcactgttgccagt
gctgttttgagtgtgaaaaattctctggcctcttcccctgctcaatcatcggtgtctgta
acatcttcagcacagcaagctgcttgtgttcaggatcaggctgatgaaacagcatcacag
gacagtagctctgaagcagttgcaaggaccccacctcctaaaagtagtgcagttgctgct
tctgcacccacaacacccgctggcagtcatgcaacacagggtgctgttgctgctttatct
ccaactagcatgtctaatgcgataaaagaagatgacgtgacaagcttccctggtcgaaag
ccttcccctgctcttaatgaaactgctttaaggggtgtcaatagaggttccctatctaac
caacccgtggctagtattacacttggttctggtggtgcagctactgggaatggaggtcta
ggagctattccttcagcttctgaagtcacgaagagaaataccttaggttccgaggatagg
cttggaagtaatgccatgggtcaggctttggtatcccctctggctaacagaatgatgatg
tcacaagcagctaaggctacagatggaattggtgttgctgatggggcaaatcctggtgat
gctacggttatgactggtagggttttctctccttctgttggtcctggtatgcaatggagg
cctggcagttcctttcagaatcaaaatgaagcgggccaattccgtggaagaactgaaatt
gcacctgaccagagggagaagttcttgcaacgatttcagcaagtacagcagcagggtcag
agtaatcttcttggtatacctccacttagtggaggaaaccttaagcagttctcgtcccaa
caacagaatccacttctgccacagttcaattctcaaagctcctctgtctctcctcaactt
ggactgggagttggagtccaagcatctagtattaacagtgttgcctcatctgcatctttg
cagcagcagccagatgcaggccactcaaaagttgaagacttgcagcaacaacagactttg
cctgaagattcttctacagattctgctgcaaatcctgggcccgggaaaaatcttttgaat
gaagatgatatgaaggcttcatatggactagataccccaatgcagggaggagtcaatggc
tctattgctgaaccatccccaagaccaagggatatagatttatctcctgggcaacctttg
caatccagtcagccatctggaagtcttggggttattggtcgaaggagtgttgctgacctt
ggagcaattggtgataacctgagtgcatccactgcaaattctggaggaatgcatgaccaa
ttatacaacttgcagatgcttgaatctgccttttacaaacttcctcaacccaaagattct
gaacgtgcaaagagctatacaccgaggcaccctgcagttacccctccaagctatccccaa
gtacaggcacccattgtcaacaatcctgccttctgggaaagacttggagctgataactac
ggcactgacactctgttctttgcattttactaccaacagaatacttatcagcagtatctg
gctgctaaggagttgaagaaacagtcttggaggtatcacagaaaatataacacatggttt
cagcggcatgaggagcctactgttgcgactgatgactttgaacaggggacatatgtgtac
tttgatttccacattgccaatgacgagcaacatggatggtgccagaggatcaagcaggag
ttcacatttgagtacaattatcttgaagatgagctcattgtataa
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