Nicotiana tabacum (common tobacco): 107822861
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Entry
107822861 CDS
T04643
Name
(RefSeq) general negative regulator of transcription subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107822861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107822861
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107822861
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107822861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107822861
NCBI-ProteinID:
XP_016504922
UniProt:
A0A1S4CUL4
LinkDB
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Position
Un
AA seq
768 aa
AA seq
DB search
MDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELEN
QIDTFEAELEGLSVKKGKQRPPRLVHLETSIVRHKAHIMKLELILRLLDNDELSPEQVND
VKDFLDDYVERNQEDFDEFSDVDELYSTLPLDKVESLEDLVTVGPPGLVKGVTVASAVLS
VKNSLASSPAQSSVSVTSSAQQAACVQDQADETPSQDSSSEAVARTPPPKSSAVTASAPT
TPAGSHATQGTVAALSPTSTPNAIKEDDVTSFPGRKSSPALNETALRGVNRGSLSNQPVA
SITLGSGGAATGNGGLGAIPSASEVTKRNTLGSEDRLGSSAMGQALVSPLANRMMMSQAA
KATDGTGVADGANPGDATVMTGRVFSPSVGPGMQWRPGSSFQTQNEAGQFRGRTEIAPDQ
REKFLQRFQQVQQQGQSNLLGIPPLSGGNLKQFSSQQQNPLLPQFNSQSSSVSPQLGLGV
GVQASSINSVASSASLQQQPDAGHPKVEDLQQQQTLSEDSSADSAANPGPGKNLLNEDDM
KASYGLDTPGGVNGSIAEPSPRPRDIDLSPGQPLQSSQPSGSLGVIGRRSVADLGTIGDN
LSASTANSGGMHDQLYNLQMLESAFYKLPQPKDSERAKSYTPRHPAVTPPSYPQVQAPIV
NNPAFWERLGADNYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEP
TVATDDFEQGTYVYFDFHIANDEQHGWCQRIKQEFTFEYNYLEDELIV
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggatgctcgcaagcttattgagcgtgaaatggagcgattcaaaatatgtgagaaagaa
actaagaccaaagcattttcaaaagaaggtttgggtcaacaacctaagacggatccaagg
gagaaggcaaaatcagagacaagagattggttgaataatgtggttggggagctcgaaaat
caaatcgacactttcgaggctgaattggaaggactctcagttaaaaaagggaagcaaagg
cccccaagattggtacatttggaaacatccattgttcggcacaaggctcacataatgaaa
ttagagttgatattaagactactggataatgatgaattgagtcctgaacaagtcaatgat
gtcaaggatttccttgacgattatgtggaacgtaatcaggaggactttgatgaattcagt
gatgttgatgagctttatagcactttaccgctagataaggtggagtctcttgaagatctg
gttactgtcggtccacctggtcttgttaagggtgtcactgttgccagtgctgttttgagt
gtgaaaaattctctggcctcttcccctgctcaatcatcggtgtctgtaacatcttcagca
cagcaagctgcttgtgttcaggatcaggctgatgaaacaccatcacaggacagtagctct
gaagcagttgcaaggaccccacctcctaaaagtagtgcagttactgcttctgctcccaca
acacccgctggcagtcatgcaacacagggtactgttgctgctttatctccaactagcacg
ccaaatgcgataaaagaagatgacgtgacaagcttccctggtcgaaagtcttcccctgct
cttaacgaaactgctttaaggggtgtcaatagaggttccctatctaaccaacccgtggct
agtattacacttggttctggtggtgcagctactgggaatggaggtctaggagctattcct
tcagcttctgaagtcacgaagagaaataccttaggttccgaggataggcttggaagtagt
gccatgggtcaggctttggtatcccctctggctaacagaatgatgatgtcacaagcagct
aaggctacagatggaactggtgttgctgatggggcaaatcctggtgatgctacggttatg
actggtagggttttctctccttctgttggtcctggtatgcaatggaggcctggcagttcc
tttcagactcaaaatgaagcgggccaattccgtggaagaactgaaattgcacctgaccag
agggagaagttcttgcaacgatttcagcaagtacagcagcagggtcagagtaatcttctt
ggtatacctccacttagtggaggaaaccttaagcagttctcgtcccaacaacagaatcca
cttctgccacagttcaattctcaaagctcctctgtctctcctcaacttggactgggagtt
ggagtccaagcatctagtattaacagtgttgcctcatctgcatctttgcagcaacagcca
gatgcaggccacccaaaagttgaagacttgcagcaacaacagactttgtcagaagattct
tctgcagattctgctgcaaatcctgggcccggaaaaaatcttttgaatgaggatgatatg
aaggcttcatatggactagataccccaggaggagtcaatggctctattgctgaaccatcc
ccaagaccaagggatatagatttatctcctgggcaacctttgcaatccagtcagccatct
ggaagtcttggtgttattggtcgaagaagtgttgctgaccttggaacaattggtgataac
ctgagtgcatccactgcaaattctggaggaatgcatgaccaattatacaacttgcagatg
cttgaatctgctttttacaaacttcctcaacccaaagattctgaacgtgcaaagagctat
acgccgagacaccctgcagttacccctccaagctatccccaagtacaggctcccattgtc
aacaatcctgccttctgggaaagacttggagctgataactatggcactgacactctgttc
tttgcattttactaccaacagaatacttatcagcagtatctggctgctaaggaattgaag
aaacagtcttggaggtatcacagaaaatataacacatggtttcagcggcatgaggagcct
actgttgcgactgatgactttgaacaggggacatatgtgtactttgatttccacattgcc
aatgatgagcaacatggatggtgccaaaggatcaagcaggagttcacatttgagtacaat
tatcttgaagatgagctcattgtataa
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