KEGG   Nicotiana tabacum (common tobacco): 107823928
Entry
107823928         CDS       T04643                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03082  ATP-dependent chromatin remodeling
nta03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107823928
   03083 Polycomb repressive complex
    107823928
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nta03036]
    107823928
Enzymes [BR:nta01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107823928
Chromosome and associated proteins [BR:nta03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107823928
   HDAC complexes
    Sin3A-HDAC complex
     107823928
    BRAF-HDAC complex
     107823928
    REST complex
     107823928
    SHIP complex
     107823928
    MiDAC complex
     107823928
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107823928
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107823928
  Chromatin remodeling factors
   NuRD complex
    107823928
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107823928
NCBI-ProteinID: XP_016506128
UniProt: A0A1S4CYB5
LinkDB
Position
9:complement(102828324..102835931)
AA seq 430 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLAYGLHNKMEVYRPHKAYPVEL
AQFHSADYVEFLNRITPDTQHLFPSEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCAASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDKFFPGTGDMKDTGERDGRFYSINVPLKDGIDDGIFTRLFKT
IIAKVVETYSPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY
TKENVARCWALETGVLLDTELPNEIPDNDYIKYFGPDYSLKLPGGHIENLNSKSYIGTIK
MQVMENLRCIQHAPGVQMQEVPPDFYIPDFDEDEQNPDERVDQHTQDKHIQRDDEYYEGD
HDNDNHMDDA
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcggtccaaggacaaaatctcctacttctacgacggcgatgtcggaagcgtgtacttc
ggtccgaaccatccaatgaagccgcacaggttgtgtatgactcatcatctggttttagcc
tatggtcttcacaacaagatggaagtctataggcctcataaagcatacccagtggagcta
gcgcagtttcattcagctgattatgttgagttcttgaaccgaattacccctgatacccag
cacttgttccctagtgaaatggctagatataatcttggagaagattgccctgtatttgac
aacttattcgagttttgccaaatttatgctggcggaacaatagatgctgcacgcagattg
aataatcagctttgtgacattgctataaattgggctggtggattgcatcatgccaagaaa
tgtgctgcttcaggattttgctatataaatgacctagttctgggaatattggagctactg
aagtatcatgcgagggtgctgtatattgatattgatgtgcatcacggtgatggtgtagaa
gaggccttttatttcactgacagggttatgacagttagtttccacaagtatggagataag
ttctttcctggaactggtgatatgaaggatacaggggaaagagatggaagattctattcc
ataaatgtgcccctcaaggatggaatagatgatggcatcttcactagactcttcaaaaca
attattgcaaaggttgtggaaacatattcacctggtgcgatagttctgcaatgtggggca
gattcactagctggtgatcgtctgggctgcttcaacctctccattgatgggcatgctgaa
tgcgtaaggtttgtgaagaaatttaatttgccgttgctggtaactggaggtgggggatac
acaaaagagaacgttgcccgatgttgggcactggaaactggagttcttttagacacagaa
cttcccaatgaaattccagataatgattacatcaaatattttggccctgattattcattg
aagcttcctggcgggcacatagagaacttgaatagcaaatcatacattggcaccataaaa
atgcaagtaatggaaaatcttcgttgcatccagcatgctcctggtgtacaaatgcaagaa
gtaccacccgacttctatattcctgattttgatgaagatgagcaaaatccagacgagcgt
gtggatcagcacacccaagataagcatatccagcgtgatgatgaatattatgaaggcgac
catgacaatgataaccacatggatgatgcttaa

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