Nicotiana tabacum (common tobacco): 107824554
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Entry
107824554 CDS
T04643
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107824554
03015 mRNA surveillance pathway
107824554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107824554
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107824554
mRNA cycle factors
P-body specific factors
107824554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
107824554
NCBI-ProteinID:
XP_016506834
UniProt:
A0A1S4D0N3
LinkDB
All DBs
Position
Un
AA seq
469 aa
AA seq
DB search
MKNRRTKVVVRHLPPTLSQSTLLEQVDSRFAGRYNWFTFRPGKTSLKHQSYSRAYIDFRN
TEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKHWSKKDAREATILKDPEYLEFL
EFLAKPVENLPSAEIQLERKEAERAGSAKDAPIVTPLMDYIRQKRAAKSGARRSISNGRS
TKRVGGTSSRTPSSAASKRGSEKRTSTTMYVLRDSSKAGNGKDKSYILVPKRDDQQLSDK
SGTSAPGSGIDLVEGEIGRSVTADSGKKKILLLKGKEKEGPNVSGGSLAQQNVASTLKNS
PSSSAPKQNQRQEASGKIIRSILLKDARQNQSASQSELQIQDKDKRPPRPPSMQLFQKDT
SGANEDKVAGNDLHVVHIEKQERRSRNRDRPDRGVWAPLRRADSSQASNEQSSQVRDFVE
GNYKHGSRRGLRDADGPSVGEGKPVRRGGTSAYNSLEKQVWVQKSSSGS
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatcggcgaaccaaagtcgttgtgcggcacttgccgccgacgctttctcagtcc
acgcttctcgagcaggttgattctcgcttcgctggtcggtacaactggttcacttttcgc
cctggcaagacgagcctgaagcatcaaagctattcaagagcctatattgactttagaaat
acagaagatgttattgagttcgctgagttctttgatggacacgtgtttgtgaatgagaaa
ggcactcagttcaaaacaattgtcgagtatgctccttcacagcgtgttccaaagcactgg
tccaagaaggatgcccgtgaagcgaccatactgaaagatcctgaatatctggagttcctt
gaatttcttgcaaagcctgttgagaatcttccaagtgctgagatacaattggagagaaaa
gaggctgaacgagctggctcagcaaaggatgctcctatagttactccattaatggattat
atacgtcagaaaagagctgcgaagagtggagctcggagatctatatctaatggaagatca
accaaaagggttggtggcacatcctcaagaactcctagctcagctgcatctaaacgaggc
tctgaaaagaggacttctacgaccatgtatgttctacgggacagttctaaggctggaaat
ggtaaggacaaatcatacattctagtgccaaaacgtgatgatcagcagctctctgacaag
tctggaacctctgctcctggatctgggattgatttagtggaaggggaaattggtcgttct
gtaactgctgatagtgggaagaagaaaatcctgctcttgaaggggaaggaaaaagaaggt
cctaatgtttctggtggttcattagctcaacagaatgtggcatctactctcaagaattca
cctagttcatctgctccaaaacagaaccagcgccaagaggcaagtggcaagatcatcaga
agtattcttctcaaggatgctcggcagaatcaatcagcatctcagtcagagcttcaaata
caggataaggacaagagacctcctcggccaccaagtatgcagttgtttcagaaggatact
agtggagctaatgaggataaggtcgctggaaatgacttgcatgttgtccacattgagaag
caagaaagacgttctaggaatagagataggcctgatcgtggtgtttgggctcctcttcgc
cgtgctgatagttcacaggccagtaatgaacaatcttcccaagtgcgagattttgttgaa
ggtaactataaacatggtagtcgtcgtggtttgagggatgcagatggaccttctgttggg
gaaggaaaacccgtgagaaggggaggtacttctgcctacaattctcttgagaaacaagtg
tgggttcaaaagtcaagttctggttcttag
DBGET
integrated database retrieval system
