Nicotiana tabacum (common tobacco): 107824757
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Entry
107824757 CDS
T04643
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107824757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107824757
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107824757
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107824757
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
107824757
NCBI-ProteinID:
XP_016507055
UniProt:
A0A1S4D0T8
LinkDB
All DBs
Position
Un
AA seq
662 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDNTGRSFPSSFSPQSGAPSPLYHHSGSIQGLHNIHGSFNVPNM
HGTLGSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPTALSQISQGNSHAHSGMTSRGGM
SVVGNPGYSSNTNGVGGSIPGILPTSAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVG
GGNIGRSISSGAGLSVPGLASRLNMNTNSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGN
SYPAGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLGS
LRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQQHFS
MGRSAGFNLGGTYSSNRPLQQLQHAPSVSSSGVSFSNINNQDLLSLHGSDAFQSSRSSYQ
QQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFKDQSLK
SMQSQVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGSPWSDE
PAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGW
FYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPVLP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcttctctgaacggatcagcttcaaatcttcctgataacacg
ggtcgctcatttccttcctctttctctcctcaatcgggtgcaccctcccctctttatcat
cactcaggaagtatccaggggctgcataacattcatgggagtttcaacgttccaaacatg
catggaacacttggttcaagaaacacagcaataaataacgtcccctccagtggtgtccag
caatctgggaataatctttctggtggtcgttttgtaccaaacaatcttcccactgccctt
tctcagatatcccaaggcaattcgcatgctcattctgggatgacgagtagaggtggtatg
agtgttgttggtaacccgggatatagcagtaacactaatggtgtagggggttctatccct
ggaattctcccaacctctgcagcaattggtaatcgaagttctgtgccaggccttggggtg
tcccccattttgggaaatgcaggcccaaggatgacaaactcagttggaaatatagttggt
gggggcaacattggcagaagcattagctctggtgcaggattgtctgtgcctggtcttgct
tcacggctaaatatgaacaccaactctggctctggaaatttaaatgttcaaggacctaat
aggctaatgagtggtgttcttcagcaagcctctccgcaggttctttctatgttagggaac
tcctaccctgctggtggcccactgtctcaaaaccacgtccaagcaattggcaattttaac
tctatgggattgttgaatgacgtaaattcaaatgatggatctccttttgatatcaatgat
ttccctcagctaagcagccggcccagttcggctggaggacctcaaggacaattgggttcc
ttacggaagcaagggctcagtcctattgttcaacaaaatcaggaattcagcattcaaaat
gaagattttcctgctttacctggatttaaaggtgggaatgctgattatgctatggatcct
caccagaaagagcaactccatgataatactctttcgatgatgcagcaacaacacttctca
atgggaagatctgctggttttaacttggggggaacatactcatcgaatcgtccactgcag
cagctgcaacatgctccatctgttagtagtagtggtgtctccttttcaaatataaataac
caggatctgctgagtttacatggttcagatgccttccaatcatcgcgctccagttaccag
caacagggtggtggacctcctggtattgggttacgacctcttaactcttcaggtactgtt
tctgggattggatcatatgatcagcttatccagcagtaccaacagcatcagggtcaatcc
caatttcggttgcagcaaatgtccactttaggtcagccattcaaagatcagagcttaaag
tccatgcaatcccaagttgctcctgacccgtttggtatgcttggtttgctaagtgtaata
cggatgagcgatccggatttgacttctcttgcacttggaattgatctaacaacacttgga
ttaaatttgaactctgctgaaaatttgtacaagacatttggttccccatggtctgatgag
cctgctaagggggatccagagtttacagtaccccaatgttattatgcgaagcaaccgcca
cctttaaatcaagcgtacttctcaaagtttcagctagatactttgttctacattttttac
agcatgccaaaagatgaagcacagctatatgctgcaaatgaactgtacaaccgcggctgg
ttctatcacagagaacatcggttgtggtttatgcgggttgccaacatggagcctctcgtc
aagacgaatgcatatgagagagggtcttacatttgttttgatccaaacacatgggagacg
atccgcaaggataattttgtgctccactatgaaatgttggaaaaaagacctgttctgcct
caacactaa
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