Nicotiana tabacum (common tobacco): 107825338
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Entry
107825338 CDS
T04643
Name
(RefSeq) DNA mismatch repair protein MSH6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107825338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nta03400
]
107825338
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107825338
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
Death_3
Motif
Other DBs
NCBI-GeneID:
107825338
NCBI-ProteinID:
XP_016507671
UniProt:
A0A1S4D2R2
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Position
Un
AA seq
1306 aa
AA seq
DB search
MASSRRSSNGRSPLVNQQSQITSFFSKATSPSPSPLVPKKVPIKSNPNPNTKPKLKSSPS
TSPCASPTTPLPLQVKRKITAPISAIVDLKPSYGQEIVGKRVKVYWPLDKTWYEGCVKSF
DSASGEHLVKYDDDDEEMIDLAEEKIEWVVEAPTKKLRRLRKSLVVEEAEEEEEKLEDLE
SVEDDSEDEDWGKNADKQVSEDEDVDEDMDLEVEEDAAAGSRSRKASADKVVVSRKRKSG
EGVKLSSSSSKKSKTVADKRSANSKVDNAVNGVNGKELVKTNEDCVRPINNDNVLLCGAV
DRFGQREAEKFPFLGKNRKDANRRSPGDANYDPKTLYLPPNFLKGLTGGQRQWWEFKSNH
MDKVLFFKMGKFYELYEMDAHIGTKELHLQYMKGEQPHCGFPEKNFSMNVEKLARKGYRV
LVVEQTETPEQLETRRREKGSKDKVVRREICAVVTKGTLTEGEMLAANPDASYMMAVTES
SQTAVLQGKRTYGVCMVDITTSKVIIGQFEDDSDCSALCCLLSELRPVEIIKPAKLLSLE
TERVLLRHTRNPLVNELVPVSEFWDAERTICEVKAIYRNMSSPQLSSSPNEMESHESTTS
EEYGERNLLPDVLCELVNLGGNGSYALSALGGALYYLKQAFLDESLLKFATFEPLPLSGF
CDSTQKPNMVLDAAALENLEIFENSRNGDSSGTLYAQINHCITAFGKRMLRSWLARPLYH
PESIRERQDAVAGLKGLNLPFVLEFRKELSRLPDMERLLARLFGSSEANGRNANKVILYE
DAAKKQLQEFVSALRGCESMVHACSSLGVILENTDSKLLCHLLTPGKGLPDVDSILKHFK
DAFDWVEANNSGRIIPHEGVDEEYDAACKQVQEIELKLSKHLKEQRKLLGDSSIDYVTVG
KDAYLLEVPECLCRSIPKEYELQSSKKGYFRYWNPVLKKLIGELSQADSEKESKLKSILQ
RLIGRFCEHHNKWRELVSITAELDVLISLSIASDYYEGPTCRPNIKSVPSEDDVPVLHAE
NLGHPVLKSDSLDKGTFVSNNVSLGGPPNASFILLTGPNMGGKSTLLRQVCMAVILAQIG
ADVPASSFDLSPVDRIFVRMGAKDHIMAGQSTFLTELLETASMLSLASRNSLVALDELGR
GTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLSIDYQKDSRVSLCHMACQVGKGSGG
LADVTFLYRLTPGACPKSYGVNVARLAGLPDGVLQRAAAKSEEFEINGHNKQFEENSYGN
LTRKAAALVQNLMNFVITEKCEDNEGVVLSELNGLQRRARILLEQN
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctcgccgctccagcaatggcagatctccgctagtcaatcaacagagccaa
atcacttctttcttctctaaagcgacttctccttccccatcacctcttgtccctaaaaaa
gttccaatcaaatctaaccctaaccctaatacaaaacctaaacttaaatctagtcctagt
accagtccttgtgccagtcctacgacacctttgcctctacaggtgaaacggaagataact
gcacctatttctgccatcgttgaccttaagccatcgtacgggcaagagatagtgggcaaa
agagttaaggtttactggccattggataaaacttggtacgaaggctgtgtaaagtctttc
gacagtgcttctggcgagcatttggttaagtatgatgatgacgatgaggaaatgatcgat
ttagctgaagaaaagatcgaatgggtagtcgaggcacccacgaaaaagttgagacggttg
cggaagtctttggtggtggaagaagctgaggaggaggaagagaaattggaggatttggag
agcgttgaggatgattctgaggatgaagattggggaaaaaatgcggataaacaagtgtct
gaagacgaggatgttgatgaggatatggacttggaggttgaggaagatgctgctgctgga
tcgagaagcaggaaagcgagtgcggataaggtggtggtgtcgaggaagcggaagagtggt
gaaggggtgaagttaagttcgagttcgagcaagaagagtaagactgttgcagataagagg
agtgctaatagcaaggtggacaatgcagtgaatggagtaaatgggaaagagcttgttaaa
accaatgaggattgtgtcaggccaatcaacaatgataatgtactgctgtgtggtgcagta
gatagatttggacaacgtgaagcagagaaatttcctttccttgggaaaaataggaaggac
gctaataggagatcccctggagatgccaattatgatccaaagactctttacctacctcct
aattttttgaaaggtttaactggtggtcagagacaatggtgggagttcaagtcgaatcac
atggataaagttctgttttttaagatgggaaagttctatgagctttatgagatggatgca
catattggaaccaaggaacttcatttgcagtacatgaagggagaacaaccccattgtgga
tttccagaaaagaacttctcaatgaatgtagagaagttggcgcgaaagggttatagggtt
cttgtggttgagcaaacagagacacctgaacagcttgagactcgtcgaagagagaaggga
tctaaagataaggttgtcagacgtgaaatatgtgcagtggtcactaaaggaacattaact
gagggagaaatgctcgcggcaaaccctgatgcttcatatatgatggcagtgactgaaagc
tctcaaaccgctgtattgcaagggaagcgtacttatggtgtctgtatggtggatatcacc
acaagcaaggttattattggacagtttgaggatgattcagattgtagtgccttgtgttgt
ctgctttctgagttaagaccggtggaaataataaagccagctaaattgcttagtcttgag
actgagagagtactgctgcggcatacacgaaatcctctggtaaatgagttggttcctgtc
tctgaattttgggatgctgagagaaccatttgtgaggtgaaggcaatctataggaacatg
agcagtccacagctgtcatcatctccaaatgaaatggaatcacatgaaagcactacctca
gaggaatatggtgaaaggaaccttctaccagatgttttatgtgagcttgtaaatcttggt
gggaatgggagttatgcactctcagcacttggaggagctctatactacttgaagcaagct
tttctggacgaatccctgctcaaatttgcaacatttgaaccgcttcccctttctggtttt
tgtgacagtactcaaaaacctaatatggttcttgatgcagctgcgcttgagaatcttgag
atatttgagaacagtcgaaatggagattcttcagggacattatacgctcaaatcaaccat
tgtatcacagcatttgggaaaaggatgctcaggtcatggcttgcaagacccttatatcat
ccagagtccataagagaacgtcaggatgctgtagccggattaaaggggctcaatctacct
tttgttcttgagtttagaaaagagttgtcaaggcttcctgatatggaacggttgcttgca
cgcctctttggtagcagtgaagcaaatggaagaaatgcaaataaagtgattttatacgag
gatgcagcaaagaaacaactgcaagagtttgtgtctgctttacgtggatgtgaatcaatg
gtgcatgcatgctcttcacttggggtgatcttggaaaacacagactcaaagctactatgt
catctattaacaccaggtaaaggtcttccagatgtagattcaattctcaagcatttcaag
gatgcttttgattgggtagaagcaaataactcgggccgaattatacctcatgagggggtt
gatgaggagtatgatgctgcatgtaaacaagtgcaggagattgaacttaaattatccaag
cacttgaaggaacagaggaaactgcttggagactcatcaatagattacgtgactgtagga
aaagatgcataccttttggaagtaccagaatgtttgtgcaggagcattccgaaggagtat
gaattacagtcatcgaaaaagggttatttcaggtactggaatccagtcttaaagaaatta
atcggagagctctcacaagctgattcagagaaggaatctaagctaaaaagcattttgcag
aggttgataggacggttctgtgaacatcataataagtggagagaattagttagtatcact
gcagaattggatgttttaatcagtttatcaattgcgagtgattactatgagggaccaaca
tgtcgtccaaacatcaagtcagtgccaagtgaagatgatgtgccagttcttcatgctgaa
aatttaggacatcctgttcttaaaagtgattctctagataagggaacctttgtttccaac
aatgtttcccttggcggtcctccaaatgcaagctttatccttcttactggtcctaacatg
ggagggaaatccactcttttgcgccaagtttgcatggctgtaattttggcccagatagga
gctgatgtaccagcatcatcctttgacttatcacccgttgatcgtatatttgtaagaatg
ggggccaaagatcatattatggcaggccagagtacattcttgacagaactcttggaaact
gcttcaatgctgtctttggcgagccgtaattcactcgtcgcactcgatgaacttggtcgc
ggtacatcaacttccgatggacaagcaatagctgaatcagttctcgaacactttgtccac
aaggtgcaatgccgaggaatgttttctacccactatcatcgattatctattgactatcag
aaagattccagagtgtcactgtgccatatggcatgccaagttgggaaagggtccggaggt
cttgcggacgttactttcctatacaggttgacaccaggtgcatgtcctaaaagttatggt
gtcaatgtggcacggctggctggacttcctgatggtgtgcttcagagagctgctgctaaa
tctgaagagtttgaaattaatggccacaataagcaatttgaagagaactcgtatgggaat
ttgacaagaaaggcagcagcacttgtgcagaatttgatgaatttcgttattactgagaaa
tgtgaagacaatgaaggtgtggttctttctgagttgaatggattgcaaaggagagcaaga
atactccttgaacaaaattga
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