Nicotiana tabacum (common tobacco): 107825761
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Entry
107825761 CDS
T04643
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107825761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nta03400
]
107825761
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107825761
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
107825761
NCBI-ProteinID:
XP_016508157
UniProt:
A0A1S4D417
LinkDB
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Position
Un
AA seq
862 aa
AA seq
DB search
MNENLEEQSKLPELKLDAKQAQGFLSFFKTLPKDPRAVRLFDRRLVVPSELGRWCSKLSF
FPGTYINXALAPNFGQNGCEVGLGYVDITKRVLGLTEFLDDSHFTNLESALVALGCRECL
VPAETGKSSEYRPMFDAISRCGVMVTERKKTEFKGRDLVQDLGRLVKGSVEPVRDLVSGF
ECASGALGCILSYAELLADESNYGNYTVKQYSLSSYMRLDSAAMRALNVMESKSDANKNF
SLFGLMNRTCTAGMGKRLLHMWLKQPLLDVEEINCRLDLVQSFVEDAALRQDLRQHLKRI
SDIERLTHNLERKRASLVHVVKLYQSSIRVPYIKSVLERHDGQFATLIRERYIDSLEKWS
DDNHLNKFIGLVETSVDLDQLENGEYMISSAYDPNLSALKDEQETLERQIHNLHKQTAND
LDLPVDKSLKLDKETQFGHVFRITKKEEPKVRKQLNSHYIVLETRKDGVKFTNTKLKKLG
DQFHKIVEEYKSCQKELVARVVQTAASFSEVFEGIAGVLSELDVLLSFADLAASCPTPYT
RPNISPPDTGDIILEGCRHPCVEAQDWVNFIPNDCRLVRGESWFQIITGPNMGGKSTYIR
QVGVNVLMAQVGSFVPCDNATISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAT
DRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATHFHELTALANKNGNNGHK
QNAGIANFHVFAHIDPFNRKLTMLYKVQPGACDQSFGIHVAEFANFPPSVVALAREKASE
LEDFSPIAIIPNDIKEAASKRKREFDPHDVSRGTARARQFLQDFSQLPLDKMDPSEVRQQ
LSKMKTDLERDAVDSHWLQQFF
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaatttggaggaacagagcaagcttcctgagcttaaacttgatgctaagcaa
gctcaaggatttctctcatttttcaaaaccctacccaaggaccctagggcagttcgcctc
tttgatcgtcggcttgtagttccatctgaattaggcaggtggtgcagcaaactttctttc
tttcctggcacctatattaatnctgctcttgctccaaacttcggtcagaatggatgtgaa
gttggcttaggctatgttgatattacaaagagagtccttggtttaacagaatttctagat
gatagccacttcacaaatttggagtctgctttggttgctcttggttgcagagaatgtctt
gtaccagcggagactggcaaatccagtgaatacaggcctatgtttgatgcaatatctaga
tgcggcgtgatggtaactgaaagaaagaaaaccgaatttaaagggagagatttggtacag
gatcttggtaggctcgtcaagggttcagtagaacctgttcgagatttggtctctggtttt
gaatgtgcatcaggagctttgggctgcatactttcttatgcagaactacttgcggatgag
agcaattatggaaactatacagtcaaacaatacagcctcagtagttacatgagattagat
tctgctgctatgagagcactgaatgttatggagagcaaatcagatgctaataaaaatttt
agtttgttcggtctgatgaatagaacatgtactgctggaatgggtaaaaggttattgcac
atgtggctcaaacagcctttactagatgtagaagagattaactgtaggctggatttagtt
caatcattcgtggaggatgctgcgcttcgccaagacttgaggcagcatctaaaaagaatt
tcagatatcgagcggctgacacacaatcttgagaggaaaagagccagtttagtgcacgtt
gtaaaactctatcagtcaagcatcagagtaccatatatcaaaagtgttttggaacggcat
gatgggcaatttgcaacactcattagggaaagatatattgattctctggagaaatggagt
gatgataatcacctgaataagttcataggtcttgtggaaacttctgttgaccttgatcaa
cttgagaatggagaatacatgatttcttctgcatatgacccaaatttatctgctctgaag
gatgagcaagagacattggagcgacaaattcataatttgcacaaacaaactgccaatgat
cttgatctacctgttgataagtcgcttaaactagataaagaaacacaatttggacacgtc
ttcagaattaccaagaaagaagaaccaaaagttaggaagcagctaaattctcattacatt
gttctcgaaacacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaactagga
gatcagttccacaagattgtagaggagtacaagagctgtcagaaagaattggtagctcgt
gtagttcaaacagctgcgagtttctccgaggtgtttgaaggtatagctggtgtactttct
gagttggatgtgctactgagttttgcggatttggctgccagttgcccaactccttacaca
agaccaaatatcagtccaccagatacaggagatattatacttgaagggtgtaggcatcct
tgtgtggaagctcaagattgggttaacttcattcctaatgactgtagactagttagggga
gagagttggtttcagattatcacaggccctaacatgggtggaaagtctacctacattcgg
caggttggtgtgaatgtcctgatggcccaagttggctcgtttgttccatgtgacaatgct
accatttctattcgtgattgtatttttgctcgtgttggcgctggagattgccagctgaga
ggagtttctacttttatgcaagagatgcttgagactgcgtcgatcttgaaaggagctact
gatagatcattgattataattgatgagttgggccgtggtacatcaacctatgatggcttt
ggtttagcttgggctatttgtgagcacattgttgaagaaattaaggcaccaacattgttt
gccactcactttcatgagctgactgcattggccaacaagaatggtaacaatggacataag
caaaatgctgggatagcaaattttcatgtttttgcacacattgacccttttaatcgcaag
ctaactatgctttacaaggttcaaccaggtgcttgtgatcagagttttggtattcatgtt
gctgaatttgcaaattttccaccgagtgttgtggccctggctagagaaaaggcatctgag
ttggaggatttctctcctattgccataattccaaatgacattaaagaggcagcttcaaaa
cggaagagagaatttgaccctcatgacgtgtctagaggtactgccagagctcggcaattc
ttacaggatttctctcagttgccactggataagatggatccaagcgaggtcaggcaacag
ttgagcaaaatgaaaaccgacctggagagggatgcagttgactctcactggcttcagcaa
ttcttttag
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