Nicotiana tabacum (common tobacco): 107827044
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Entry
107827044 CDS
T04643
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
KO
K14408
cleavage stimulation factor subunit 3
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107827044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107827044
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107827044
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_CcmH_CycH
TPR_2
TPR_Slam
TPR_9
Motif
Other DBs
NCBI-GeneID:
107827044
NCBI-ProteinID:
XP_016509606
UniProt:
A0A1S4D8B4
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Position
5:159744074..159761180
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AA seq
739 aa
AA seq
DB search
MTEKYNVEAAEILANEALRLQISEAVPIYEQLLSTFPTAAKYWKQYVEAHMAVNNDDATK
QIFSRCLLNCLQIPLWRCYIRFIRKVNDKRGNEGQEETRKAFDFMLNYVGADIVSGPVWM
EYIAFLRSSPAQTTQEESQRMTSVRKAYQRAIVTPTHHVEQLWRDYENFENSISRALAKG
LVSEYQPKYNSARAVYRERKKYIDEIDWNMLAIPPSGSSKEEMQWMAWKRLLAFEKANPQ
RIDSASANKRIVFTYEQCLMYLYHYPDIWYEYATWHAKAGSIDSAIKVFQRALKALPDSE
MLRYAYAELEESRGALQAAKKVYENLLGDGSNASALSHIQFIRFLRRSEGVEAARKYFLD
ARKSPNCTYHVYVAHAMMAFCLDKDAKMAHNVFEAGLKRFMHEPGYILEYADFLYRLNDD
RNIRALFERALSSLPPEESVEVWKKFTQFEQTYGDLASMLKVEQRRKEALSRTGDDGTSE
LESSLQDVVSRYSFMDLWPCSSNDLDHLARQEWLARNINKKTDKPTLGIEAGSADKTSSG
VLSNTNPPAKVVYPDTSKMTIYDPRQMSGPAALAVPSASGTLPCSGSSGGPPNALNDILK
SLPPAFAAFMANLPAVEGPTPDADFVISVCLQSNIPLATGKSGTASFPLQSGPAPSTSDI
SDSSKFRSRDRQTGKRKDMDRQKDDESSTVQSQPLPRDVFKIRQLQKTRVASSSRVTSSY
TGSASYGSALSGDLSGSTG
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaaagtataatgttgaagctgcagaaattcttgctaacgaggcactgcgcttg
caaatttcagaagcagtgccgatatatgagcaacttctgtccacgtttcccactgcggca
aaatactggaagcaatatgtagaggcacacatggcggtaaataatgatgatgcaacaaag
caaatatttagtcgctgtctcttgaactgtctacagattcctctttggcgctgttacatc
cgctttatcaggaaagtcaatgacaagagggggaatgagggtcaagaagagacaagaaag
gcttttgatttcatgcttaactatgttggagcagacattgtatctggtccagtgtggatg
gagtacattgcatttttaaggtcttcgcctgctcaaaccacgcaagaagaatcacaacga
atgacctcagtgaggaaagcataccaaagagctattgtcaccccaacccatcacgtggaa
cagctttggagggactatgagaattttgaaaattcaattagtcgagccttggcaaaaggg
ctggtctctgaataccaaccaaaatataacagtgcgagggctgtatacagagaaaggaag
aagtacattgatgaaattgattggaatatgctagcgattccaccttccggctcttccaag
gaggaaatgcaatggatggcatggaaaagacttctagcctttgagaaagcaaacccccag
aggatagacagtgcttctgctaataaaagaattgtgttcacatatgagcagtgcctcatg
tatttgtatcattatcctgacatatggtatgaatatgccacatggcatgcaaaagctggt
tcaatagactctgctatcaaggttttccagcgagctctaaaagctcttcctgactccgaa
atgctcagatatgcttatgctgaacttgaggaatcacgtggagcccttcaggctgctaaa
aaagtatacgaaaatcttctgggggatggatccaatgcctcagcactgtctcatatccag
tttataaggtttttaagaagaagtgaaggagttgaagcagctcgcaaatactttcttgat
gcacggaaatctccaaattgcacttaccatgtctatgtagctcacgcgatgatggctttt
tgtcttgacaaggatgcaaagatggcacacaatgttttcgaagcagggttgaaacgcttt
atgcatgagcctggatatatccttgagtatgcagatttcctttatcgtttgaatgacgat
agaaacatcagagcattatttgaacgagcattgagctcactccccccagaggaatctgtt
gaggtttggaaaaaattcactcaatttgagcaaacgtatggagatcttgccagcatgttg
aaggttgagcagagaaggaaagaagctctttccagaacaggtgatgatggaacatcagag
ttagagagttcgttacaagatgttgtatcacgctacagtttcatggatctgtggccttgc
tcttcaaatgacttggatcatttagcacgccaagagtggctcgcgaggaacatcaacaaa
aaaactgacaaacctactcttggtattgaggcaggttctgcagataagacttcttctggt
gttttgtccaacacaaatccccctgccaaggttgtgtatccagatacttcaaaaatgaca
atttatgacccaaggcaaatgtcaggtcctgctgctcttgcggttccatctgcttcaggc
accttaccttgttctggtagcagtggtggaccaccaaatgctcttaatgatattctgaaa
tcgttgccccctgcatttgcagcgttcatggcaaatttgccagctgttgaaggtcctact
cctgatgctgatttcgtgatatccgtatgtttgcaaagcaacattcctttagcaaccgga
aaatcaggaaccgcctcttttccgttgcagtcaggccctgctccatctacgagtgacatc
tctgattcaagcaaattcaggtcgagagacagacagactggaaagaggaaagacatggat
aggcaaaaggatgatgaatcgtcgactgtacaaagccagccccttcctagagatgttttc
aagattcgccaattacaaaaaacccgtgttgctagttcgtctcgagttactagttcatac
actggatcagcgtcttatggtagtgctctttctggagacctctcgggcagcactggttga
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