Nicotiana tabacum (common tobacco): 107827588
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Entry
107827588 CDS
T04643
Name
(RefSeq) putative U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107827588
09123 Folding, sorting and degradation
03018 RNA degradation
107827588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107827588
03041 Spliceosome [BR:
nta03041
]
107827588
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107827588
mRNA degradation factors
5'-3' decay
Lsm complex
107827588
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107827588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
107827588
NCBI-ProteinID:
XP_016510240
UniProt:
A0A1S4DA23
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All DBs
Position
7:complement(131113360..131119187)
Genome browser
AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEEAKSRADRKPPGVGGRGRGRGRDESASGRQAKGIGRGME
DAGAKGRGKGGPSAKSGGKGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgctctctttgctcaagactgcacaggggcatcccatgttggtggagctaaaa
aatggagagacttataacggacatttggtgaattgtgatacttggatgaacatccatctt
cgtgaagtcatctgtacatcaaaggatggagatagattttggagaatgccagaatgttat
attcgtggcaataccataaagtatcttagagttcctgacgaggtgattgataaagttcag
gaagaagcaaaaagccgtgcagatagaaaaccacctggtgtaggaggacgaggaagggga
agaggtagggatgaaagtgcttctggaagacaggcgaaaggcattgggcgtggaatggaa
gatgcaggtgccaaaggccggggcaaaggaggacctagtgccaagtctggtggaaaaggt
ggaggccgtggacgtggctag
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