Nicotiana tabacum (common tobacco): 107827660
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Entry
107827660 CDS
T04643
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
nta
Nicotiana tabacum (common tobacco)
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107827660
03041 Spliceosome [BR:
nta03041
]
107827660
03036 Chromosome and associated proteins [BR:
nta03036
]
107827660
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107827660
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107827660
mRNA cycle factors
Common to processing body (P body) and stress granule
107827660
Spliceosome [BR:
nta03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
107827660
Chromosome and associated proteins [BR:
nta03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107827660
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107827660
NCBI-ProteinID:
XP_016510331
UniProt:
A0A1S4DAB5
LinkDB
All DBs
Position
Un
AA seq
537 aa
AA seq
DB search
MSMPWNGSYTESTRSSRSTRPTYLPPHLRNPSLPPSNVEQLNINAYDDVPVEVTGADIPE
PLSSFSEIGDLYDNIRRCNYVKPTPIQRYAIPVGMAGRDMMACAQTGSGKTAAFCLPIIS
GILKDKRTTSTSTRGRGGCAFPLALILSPTRELSCQIHEEAKKFSYLTGLKVVVVYGGAP
IIPQLGNLEKGVDILVATPGRLVDMIEKSRVSLQAVKYLALDEADRMLDMGFEPQVRKIV
QKMKMPPPGRRQTMLFSATFPTEIQRLASDFLSNYIFLAAGKVGSSTDLIVQKVEFVPDT
DKKDHLLNLLHAQHSNQMDAKLALTLIFVETKRGADTLERWLVRSGIPSIAIHGDKMQFE
RERALKSFKSGQTPVLVATDVAARGLDVPNVAHVINFDLPRNIDDYVHRIGRTGRAGKSG
LATAFFNDKNVPLAKDLVELMQGANQEIPNWLSEYAETCYSSDGARTSRYVGSKFGGYDY
RSVSFHSGSGNYSSQFADTEDATHYAVSASAFTYGAPFAAGCYGPSEMDSFPAASYR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgccatggaatggttcttataccgagtcaactcgctccagtcgttctactcga
cccacttacctccctcctcacctgcggaacccatcgcttccaccttcaaatgttgaacaa
ctgaatataaatgcatatgatgatgttccagtagaggttactggggctgatattccggag
ccactctcgtccttttcggaaattggtgacttgtatgataacataaggaggtgcaactat
gtgaagccaacgccgattcagcgatacgcaataccagtcggaatggcggggagagacatg
atggcttgtgctcagacgggttcagggaaaacggccgcgttttgccttcccattatcagt
gggattttgaaggacaaaagaactactagtactagtacaaggggaagggggggttgcgct
tttcctcttgctctcatactctctcctactagagagttgtcttgtcagatacatgaagag
gcgaagaagttctcttacttgacaggattgaaggttgtggttgtatatggaggagcaccc
ataattcctcagttaggcaatctggaaaagggtgttgacattttagttgccacacctggg
cgcttggtggacatgatagagaaatcaagagtttccttacaagcagtgaaatatttggcc
ttagatgaagctgatcggatgcttgacatgggctttgagccccaagttcgtaagattgtt
cagaaaatgaagatgcccccacctggtagaaggcagacaatgctttttagtgcaacattt
ccaactgagatacagaggcttgcatcggattttctttcaaactacatcttcttggcggct
ggaaaagttgggtccagcactgatctaatagttcaaaaagttgagtttgttcctgatacg
gacaagaaggatcatttactgaatcttcttcatgctcaacattcaaatcaaatggatgca
aagctggctttgactctaatatttgtggagaccaaaagaggagcagatacattagaacgt
tggttggtcaggagtggtatcccgtctattgccattcatggtgataaaatgcagtttgag
agagaacgagcgctaaaatcatttaaaagtggacaaactcctgttttagttgcaactgat
gtagctgctcgcggtctggatgttccaaatgttgctcatgtcataaattttgacttgcca
aggaacatagatgactatgtacacagaattggacgaacaggtcgtgctggtaaatctgga
ttggcaactgcatttttcaatgacaagaatgtgcctttggcaaaggatcttgttgaattg
atgcagggggcaaatcaagaaattcctaattggctgagtgaatatgctgaaacatgttac
agcagtgatggtgctagaacgagtcgctatgttggaagtaagttcgggggctatgattac
aggagtgtttccttccatagtggtagtggaaactactctagccagtttgctgatacagaa
gatgctactcattatgctgtgtccgctagcgctttcacctacggtgctccttttgcagcg
ggttgttatggtccttctgaaatggactcctttcctgctgcttcataccgttaa
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