KEGG   Nicotiana tabacum (common tobacco): 107828384
Entry
107828384         CDS       T04643                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03082  ATP-dependent chromatin remodeling
nta03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107828384
   03083 Polycomb repressive complex
    107828384
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:nta03036]
    107828384
Enzymes [BR:nta01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107828384
Chromosome and associated proteins [BR:nta03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     107828384
   HDAC complexes
    Sin3A-HDAC complex
     107828384
    BRAF-HDAC complex
     107828384
    REST complex
     107828384
    SHIP complex
     107828384
    MiDAC complex
     107828384
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     107828384
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    107828384
  Chromatin remodeling factors
   NuRD complex
    107828384
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 107828384
NCBI-ProteinID: XP_016511156
UniProt: A0A1S4DCM4
LinkDB
Position
22:complement(77554212..77560829)
AA seq 472 aa
MDSSTVDGGASLPSTGTDAKKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYYL
HRRMEISRPFPAGPEDIRRFHSPDYVDFLSSVSPETLHDHTHARHLKRFNVGEDCPVFDG
LFGFCQASAGGSIGAAVKLNRQDADITINWAGGLHHAKKSEASGFCYVNDIVLGILELLK
VHRRVLYIDIDIHHGDGVEEAFFTTDRVMTVSFHKFGDFFPGTGHIKDIGAGQGKYYALN
VPLNDGMDDDSFGRLFRPVIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCL
RFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPGNKLPYNEYYEYFGPDYTLHV
EPNPMENKNSPRDLEKIRNILLEQLSQLPHAPSVPFQTTPSTTEVPEEEEEDMDQRPKPR
IWNGEDYESDADEDEHPRQRSSDSNLTPVETTDMRDVDDQAKVDDDMVDADH
NT seq 1419 nt   +upstreamnt  +downstreamnt
atggactcttccaccgttgacggcggcgcgtcgcttccatccaccggaaccgacgcgaag
aagcgccgcgtctcatacttctacgagcccacaatcggcgactattactacgggcaaggt
cacccaatgaagcctcaccgtatacgtatggcccacaatctcatcgtgcactactaccta
caccgtcgtatggaaatcagtcgcccttttccggcgggacctgaggacattcgccggttc
cactcgccggactacgtcgacttcctttcctccgtttcgccggagactcttcatgaccat
acccacgcgcgtcatctcaaacgcttcaatgttggtgaggactgccctgtttttgatggg
cttttcgggttttgtcaggcttctgctggtggatctattggtgctgctgttaagcttaat
aggcaagacgctgatataactatcaactgggccggtgggctccaccatgcaaaaaaaagt
gaagcttctggattttgctatgtcaatgatattgttctcggtattcttgagctcctcaaa
gttcataggcgtgtattgtatatagacattgatattcaccatggtgatggtgttgaggag
gcttttttcacaacggatagagtcatgacagtgtctttccataagtttggggacttcttt
cccggtacagggcatatcaaagatattggtgctggtcaagggaaatactatgccctaaat
gtcccattgaatgatgggatggacgacgatagttttggtcgtctatttcgtcccgtaatt
caaaaagtcatggaggtctatcaacctgatgctgtcgttcttcaatgtggggctgattca
ctggctggagacaggttgggttgcttcaacttgtctgtcaagggccatgcagactgcctt
agattcctcagatctttcaatgtccctctaatggtattgggtggtggaggttataccata
agaaatgttgcgaggtgctggtgttatgagacagcagttgcagttggggtagaaccagga
aataaattgccatacaatgaatattatgagtactttggcccagattatactcttcatgtt
gaaccaaaccccatggagaataagaattcacccagggatctggagaagatcaggaacata
ttgcttgagcaactctcacaattacctcatgcacctagtgtgccatttcaaaccactcct
tctacaacggaagttccagaggaggaagaggaagatatggatcaaagaccaaaaccacgt
atatggaatggagaggattacgagtctgacgctgatgaagatgagcatcctagacaacga
agttcagatagtaatcttactccagtcgaaacaactgacatgagggatgtcgatgaccaa
gccaaagtagacgacgacatggttgatgccgatcactag

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