Nicotiana tabacum (common tobacco): 107829018
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Entry
107829018 CDS
T04643
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107829018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107829018
Spliceosome [BR:
nta03041
]
Complex C
Other components
Step II factors
107829018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_DCAF4
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
107829018
NCBI-ProteinID:
XP_016511916
UniProt:
A0A1S4DEZ6
LinkDB
All DBs
Position
Un
AA seq
587 aa
AA seq
DB search
MDLLQSYADDEAAESPPQNPNSQTSDQSPSPDSSPIRMLPSKSAAPIVDDTMLALTVAGE
AARAQSKPLDPTHHLVGFNPTYEQLWAPIYGPAHPYAKDGLAQGLRNHKLGFVENAAIEP
FVFDEQYNTFQKYGYAVDPSENSYIGDLDKLKECDAISVYNIPQHEQKKRKLEKKKEKME
EEGDEGDVDMSEVENPATDTWLMKNRKSPWAGKKEGLQVELTEEQKKYAEEYAKKKGEER
GGGEKPEPLLEKSTFHGKEEKDYQGRSWIAPPKDAKAANDHSYIPKRLVHTWSGHTKGVS
AIRFFPKHGHLILSAGMDAKVKIWDVYNSGKCMRTYMGHSKAVRDIWFCNDGSKFLTAGY
DKYIKYWDTETGQVIQTFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQITQ
EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPHPN
GNWIAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVLSGDGEGRC
WFWDWKSCKVFRTLKCHEGVCIGAEWHPLEQSKVATCGWDGLIKYWD
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggatctcttacagtcctacgccgacgatgaagccgccgaatcgccgccacaaaaccct
aactcccaaacttccgaccaaagcccttcgccggattcatccccaatccgcatgctccct
tcaaaatccgccgcccccatagtcgacgacacgatgctagccctaacagtcgccggcgaa
gctgccagagctcaatccaaacccctcgacccgacccatcacctcgtcggattcaacccg
acatacgaacaactctgggcaccaatctacgggccagctcacccctacgccaaggacggg
ttagctcaagggctccgaaatcacaagctagggtttgtcgaaaacgccgccattgaacct
tttgtattcgacgagcagtacaacacttttcagaaatacgggtacgctgttgatccctct
gaaaatagttacattggtgatttggataaattgaaggagtgtgatgcaatttctgtgtat
aatatacctcagcatgaacaaaaaaagaggaaattagagaaaaagaaggaaaaaatggag
gaggagggtgatgagggtgacgtggacatgtcggaagttgagaatccggcgaccgacacg
tggctgatgaagaacaggaagagtccatgggctggaaagaaagaagggttacaagtagaa
ttaactgaggagcagaaaaagtatgctgaagagtatgctaagaagaagggtgaagaaaga
ggtggtggagaaaagcctgagcctttacttgaaaagagtacattccacggtaaagaggaa
aaagattatcagggtagatcgtggatcgctccacctaaggatgcgaaggctgcgaatgat
cattcttatataccaaaaagattggttcatacttggagtgggcacaccaaaggggtttcg
gctattaggtttttccctaagcatggtcatttgattttgtcagctgggatggatgcaaag
gtgaagatttgggatgtttacaattctggtaaatgtatgaggacttacatgggacattcg
aaggcggtgagagatatttggttttgcaatgatgggtcaaagtttttgacagctgggtat
gataagtacattaagtattgggatacagagacaggacaggtgatccaaacgttcaccaca
gggaagataccctatgtggtgaggcttaaccctgatgaggataagcagaatgtacttttg
gctggtatgagtgataagaagattgtgcagtgggacataaatagtggacagattacacaa
gagtatgatcaacatctgggggcagttaatacaattacctttgtggataataataggagg
tttgtgacctctagtgatgataaatcactccgtgtttgggaatatggtattccggttgtt
attaagtatattagtgaaccccatatgcattccatgccatctatttcgccccatccgaat
gggaattggattgcagctcaaagtttggataaccagattcttatttatagtacgcgagag
agatttcagctgaataaaaagaaaagatttgctggacacattgtcgctggttatgcttgc
caggtcaacttttcacctgatggacggtttgtcttatcgggagatggtgaaggcagatgc
tggttttgggattggaaatcgtgtaaggtcttcagaactctcaagtgtcatgaaggggtc
tgtattggtgcagagtggcatcctctggaacaaagtaaagttgctacatgtggttgggat
ggtttgatcaaatactgggattag
DBGET
integrated database retrieval system
