Nicotiana tabacum (common tobacco): 107829423
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Entry
107829423 CDS
T04643
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107829423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
107829423
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107829423
Spliceosome [BR:
nta03041
]
Complex C
Other components
Step II factors
107829423
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Sigma54_activ_2
AAA_16
ABC_tran
TsaE
Flavi_DEAD
PhoH
T2SSE
Motif
Other DBs
NCBI-GeneID:
107829423
NCBI-ProteinID:
XP_016512374
UniProt:
A0A1S4DGI0
LinkDB
All DBs
Position
Un
AA seq
818 aa
AA seq
DB search
MGAEVEEDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITELGRKCDTVDEFDGKLKE
NGAEMPDYFVRTLLTIIHAILPPKVKSKSENELSKDDSEFSALKIRDDRDRVKELEKEIE
LEAKSKRGKDEEEDFDKNRRDRRRERDRDDRRERGKDRDRDRDRDRDRDRDRGRDREMDR
DWDNHGDDRGEYKGRERHRDRERDKNKYEKNRRDGYGEGEEDDMRSGRHQDRNKYEKNRR
DGYEEDGNDERRKGRYPSDELELYGVYKGRVSRVMDSGCFVQLNDFRGKEGLVHVSQLAT
RRVSNAKDLVKRDQEVYVKVISISGQKLSLSMRDVDQNTGRDLLPLKKSSDDDGLRANPS
GMNSEGSKTRIGLSGIRIKEEEDVVPSRRPLKRMSSPEIWEAKQLIAAGVMSVKEFPMFD
EEGDGVLYQEEGAEEELEIELNEDEPPFLQGQSRYSVDMSPVKIFKNPEGSLSRAAALQS
ALIKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKK
DAYGKALTFGQRSKLSLQEQRKSLPIYKLKNELVQAVHDNQVLVVIGETGSGKTTQVTQY
LAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYM
TDGMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLD
AEKFSGYFFNCNIFTIPGRTFPVEVLYTKQPESDYLDAALITVLQIHLTEPEGDVLLFLT
GQEEIDYACQCLYERMKGLGKNVPELIILPVYSALPGA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgaagttgaagaagatgggttaaagaaattagagtatctttcactagtttca
aaggtttgttcagagctggagacccatttagggttcggtgataaagtattagctgagttt
attacggagcttggtcgaaagtgcgacacagtggacgaatttgatgggaaattgaaagaa
aatggtgctgaaatgcccgattattttgtccgcactttattgacgattattcatgcaatt
ttgcctcctaaggtgaagtccaagtcagagaatgagttgagtaaggatgactctgaattt
tcggcattgaaaattagggatgatagagatagagtgaaggaattagagaaggagattgag
ttggaggcaaagagtaagagggggaaggatgaggaagaagattttgataagaataggcgt
gacaggaggcgagagagggatcgagatgatagaagagaacggggcaaggatagggatagg
gatagggatagggatagggatagggatagggataggggtagggatagagagatggataga
gactgggataatcatggtgatgatagaggtgaatataagggccgggaaaggcatagggat
agggagcgggacaagaataaatatgagaagaataggagagatgggtatggggaaggcgag
gaggatgatatgaggtctgggaggcatcaggacaggaataagtatgagaagaacagaaga
gatgggtatgaggaggatgggaatgatgaaagaaggaaggggaggtatccgtcggatgaa
cttgagttgtatggagtgtataaggggagggtgtcgagggtgatggattctggttgtttt
gttcagctgaatgattttagggggaaagaggggttggtgcatgtttcccagcttgctact
agaagggtttcaaatgcaaaagatttagtaaagcgtgaccaggaggtttatgtgaaggtg
atctctattagtgggcagaagctgagtctgtcgatgagagatgttgatcagaatactgga
agggatttgttgccattgaagaagagctcggatgatgatggattgagggcgaatccttcg
gggatgaacagtgagggttccaagacaaggattggtctttcaggtatcaggattaaagag
gaggaagatgttgttccatcacgtcgaccattgaagagaatgagttctcccgaaatatgg
gaagcaaaacaactcatagctgcaggtgttatgagtgtaaaggaatttcctatgtttgat
gaagaaggggatggggtgctatatcaggaagagggtgcggaagaagagcttgagattgag
ttgaatgaagatgaaccccctttcctgcaaggtcagagtcggtattcagtggatatgtcc
cctgttaaaatttttaaaaatcctgaaggatccttgagtcgtgctgctgcacttcaatca
gctttgattaaagagagaagagaagtgagggaacagcaacaaagaacaatgcttgattcc
atcccgaaggatcttaacagaccatgggaagacccaatgccggagactggtgagagacat
ctggcacaggagttgaggggtgttggtttatctgcctatgatatgccagaatggaaaaag
gatgcttatggtaaagccttgacctttgggcagaggtctaaactatctctccaggagcag
aggaagagccttccaatttacaagttgaagaatgaactggtacaggctgtccatgataat
caggtccttgtcgtcattggtgagacaggttctggcaagacaacacaggtgacacagtat
ttagctgaggcagggtatacaacaaagggcaaaattggatgtactcaacctcgtcgagtg
gctgctatgtcagtggctaagagagttgctgaggaatttggttgtcgtttaggggaagaa
gttggttatgctatccgtttcgaagattgtactggaccagaaactgttataaagtatatg
actgatggtatgcttctgagggagattttgattgatgaaaatttgtcccagtattcagtc
gtaatgctcgatgaagcgcacgagagaaccattcacactgatgttctcttcggactgctt
aagcaacttgtgaagaggagacctgacctccgtctgatagtcacatctgcaaccttggat
gcagagaaattttctggatatttcttcaactgtaacatctttacaattccaggaagaact
tttccagtagaggtgctttacactaaacaaccagaaagcgattaccttgatgcagcttta
atcactgtactacagatccacttgacagaacctgaaggtgacgtcctccttttcctgact
ggtcaagaggagattgattatgcttgccagtgtctgtacgagaggatgaaagggctaggt
aaaaatgttcctgaactgattattttacctgtctatagtgctctgccnggcgcc
DBGET
integrated database retrieval system
