KEGG   Nicotiana tabacum (common tobacco): 107829673
Entry
107829673         CDS       T04643                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
nta  Nicotiana tabacum (common tobacco)
Pathway
nta03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:nta00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107829673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nta03021]
    107829673
   03036 Chromosome and associated proteins [BR:nta03036]
    107829673
Transcription machinery [BR:nta03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     107829673
   Coactivators
    SAGA/TFTC/STAGA complex
     107829673
Chromosome and associated proteins [BR:nta03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     107829673
    STAGA complex
     107829673
    TFTC complex
     107829673
    SAGA complex
     107829673
    SLIK complex
     107829673
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 Beta-prop_IFT122_1st TFIID_NTD2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_EML ANAPC4_WD40 DSE1_N Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_RIG_2nd CFAP251_N WDR90_beta-prop_4th Beta-prop_WDR75_1st PAC11 Beta-prop_VPS8 ASA1 Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_NOL10_N Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_IP5PC_F Tricorn_2nd Beta-prop_WDR35_TULP_N LisH_PAC1 PALB2_WD40 Beta-prop_ACSF4 LisH Cytochrom_D1 LisH_SSDP
Other DBs
NCBI-GeneID: 107829673
NCBI-ProteinID: XP_075075300
UniProt: A0AC58RRE0
LinkDB
Position
8:complement(38905879..38927565)
AA seq 654 aa
MDEEEIEKAVVAYLKKKGFKQTELAFQEEQQLNKNTNSQLDPDITKKILSFSEFETGPER
YQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVARGHIQEARAFFDSYREDHEM
MHLRDLQKLEGVLSPSHLKEMEFAHSIRLSKVNIKMCQYSYDLLLQYLHKTESITMLGII
NERINFQVSPGQPGSISDDAEVVTLVGSGPDASLLNQKEIHWGLLEDSLEERLEKTGGMV
PDSEKFDGDPKEGEVEENKKKSVEGGKQGASLKKQKKDKVGVATGKSSRTEGSTVTTAPR
VKPELALPAIPAEVEHSILEDLRNRVQLSNAALPSVSFYTFVNTHNGLNCASISHDGSLV
AGGFSDSSLKVWDMAKLGQQTGPSFLQGETDSPSSEHVLGSSGGRRCYTLFQGHSGPVYS
ASFSPYGDFLLSSSSDSTIRLWSTRLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRT
ARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGNCVRIFIGH
RSMILSLAMSPDGRYMASGDEDGTVMMWDLSSGRCITPLVGHSSCVWSLAFSGEGSLLAS
GSADCTVKLWDVTTSTKAPLKEENKPGINNRLRSLKTLPTKATPVYALRRWSHG
NT seq 1965 nt   +upstreamnt  +downstreamnt
atggacgaagaagaaatagagaaagcagtggtagcgtatttgaagaagaagggtttcaag
caaactgagcttgcttttcaagaagaacaacaacttaataaaaacacaaattcccagctt
gaccctgacattaccaaaaaaatcctctctttctctgaatttgaaactggtcctgaacgg
taccaagaagaatatagcaagcttcgatcatgggcttatagttcacttgatttatataag
cacgagttgcttcgtgttttatatcctgtgtttattcattgtttcatggaacttgtcgct
agaggtcatattcaagaagctcgagccttttttgatagttaccgtgaagaccatgagatg
atgcatttgcgtgatctgcagaagttagaaggtgttctctcaccgtcccatctaaaggaa
atggaatttgctcattctatacggcttagcaaagtgaacataaagatgtgccagtactcg
tatgaccttttgctgcaatacttgcacaagacagagtctattacaatgcttggaatcatc
aatgagcgcataaattttcaagtttctcctggacagcctggctccatatctgatgatgca
gaagttgtaactctcgttggaagtggccctgatgctagcctcttaaatcagaaagaaatt
cattgggggctgcttgaagactctttagaagaacggttagaaaagacaggaggtatggtt
ccagattcggaaaagtttgatggagatcctaaggaaggagaagtggaagaaaacaagaag
aagtcagttgaaggtggaaagcaaggcgcatctcttaaaaagcaaaagaaggacaaagtt
ggggttgcaacaggaaaatcttctcgtacagagggcagcacagtgacaactgcaccacgt
gtcaaaccggaacttgctttacctgctattcctgcagaggtagaacattctattctggaa
gacttgaggaaccgtgtgcagttgagtaatgcagcattgccctctgttagcttctataca
tttgttaatacacataatggactaaactgtgcatcaatatcacacgacggatcactcgtg
gctggtggattctcagactcgtctttgaaggtttgggacatggcaaagcttgggcaacaa
actggtccatcttttttgcagggggaaactgattcaccttctagtgagcatgtgcttggc
tcaagtggtggaagaagatgttatacattatttcagggccattctggccctgtttattct
gcgtcctttagtccgtacggggattttcttctatcttcttcatcagattcaacaattcgc
ttatggagtacaaggttaaatgctaatcttgtttgctacaaaggccacaattacccagta
tgggatgttcagtttagtccagttggtcattattttgccagttgttcacatgaccgcact
gcaagaatctggtctatggacagaatacagcctctgagaataatggccggacacttatca
gatgtggattgtgtgcaatggcatgcaaactgcaattacattgcaactggatcaagtgac
aaaactgtacgcttgtgggatgtccaaagtggcaactgtgtcaggattttcattggtcat
aggagtatgatcctgtcattggcaatgtctcctgatggtcgatatatggcatcaggtgat
gaagatggaacagtcatgatgtgggatctctcaagtggacgttgtattactcctttggtt
ggacactcctcctgtgtatggtcacttgcttttagtggtgaaggttcacttcttgcatct
ggctctgctgattgcactgtgaaattatgggatgtaaccacaagcacaaaagcgccactg
aaagaagagaacaaacctggaattaacaataggcttcgatcattgaagaccctgccgaca
aaagctactccagtctatgctctgcgcagatggagtcatggctag

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