Nicotiana tabacum (common tobacco): 107829701
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Entry
107829701 CDS
T04643
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107829701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107829701
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107829701
mRNA degradation factors
5'-3' decay
Decapping complex
107829701
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GFIT
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NCBI-GeneID:
107829701
NCBI-ProteinID:
XP_075076129
UniProt:
A0AC58RTT7
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Position
8:complement(197145782..197154844)
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AA seq
817 aa
AA seq
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MERSDGKDSMDLSHSSSSISDSAHFDASQYAFFGRDIGEEVELGGLDEEGNSCVPSVDGG
FGDEDVQEYHLFEKDEGSALGSLSDIDDLATTFSKLNRNVTGPRHPGVIGDRGSGSFSRE
SSSAAEWAKETDFTDWFDQHLSDTECYQDSKRWSSQTHFSPVHHAESKPLYRTSSYPEQP
QQLQRFSSEPILVPKASYTSLPPPGGRSQQASPHNLLHHQSMPSLAAGPQSPYSTANLPT
LSNPNIHLAGLSHGLHYGGNMPQWTPTGHSLNTRLQNHWISHAGLIHGDHSSLLNSISPH
QIPQNGLLSPQLMSPRQLQQQRLHPSVQPSLAHFSALRSQFNSFPSPSHPGKYGSADSRD
SRSKSSNKGRQNVRFSQQASEAGSQKSESNVSKFRSKYMTGDEIESILKMQHPATHGNDP
YVDDYYHQARLAKKAAESRSKYRFCPNKEQPSRSRNSTESQPHLHVDAKGQISFSSIRRP
RPLLEYDPPGFVCNGSGEHDMSEKPLEQEPMLAARITIEDGFYLLLEVDDIDRLLQFSQP
QDGGAQLRRKRQILLEGMAASLQLVDPLGKSGSSVGLTPKDDIVFLWLVSLPKGRKLISR
YLQLLAPGGELARIVCMAIFRHLRFLFGSHPPNPGATETITNFAKTVSVCTRGMDLNLLS
ACLAAVVCSSEQPPLRPLGSPAGDGASIILKSVLEKATHLLTDPQAVSSFSMPNPALWQA
SFDAFFGLLTKYCLSKYDSIMQSILPQTQSNTETFDAEAARAVSREMPVELLRASLPHTN
EQQRKLLLNFAQRSMPVTGSNAHGGSTGQISPESVSC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctgatggcaaagattccatggacttgtcccactcctctagctccatctcc
gatagtgcgcattttgatgcatcacagtatgcattttttggacgagatataggagaggaa
gtcgaattggggggcctagacgaagaaggaaacagttgtgttccctcggtggatggtgga
tttggtgacgaggatgtacaggagtaccatttgtttgaaaaagatgagggatcagctttg
gggtctttatccgacatagatgatctggcaactacattttcaaagttgaacagaaacgtc
acaggacctaggcatcctggagttattggagatcgtggatcaggatctttttctagggaa
agttcgtcggcagctgaatgggcaaaggaaactgattttactgattggtttgatcagcat
ttgtctgacactgaatgttaccaggatagcaaaagatggtcttcacagacacatttctct
cctgtgcatcatgcagagtcaaaaccgttgtatagaacatcctcctaccctgagcaaccc
caacaacttcaacgcttctcaagcgaacccattttagtgccaaaggcatcttacacttct
ctccctcctcctggtggcagatctcagcaagcctcaccacacaacctattgcatcatcaa
agtatgccatctcttgctgctggacctcagtctccctattcaactgccaatctccccact
ttgtcaaatcctaatatccatttagcaggcttgtctcatgggctccactacggtggaaac
atgccacagtggacccctacgggtcattctctcaatacccggctgcaaaaccactggatt
agtcatgccggtctcatccatggggatcattctagcctcttaaatagtatatctccacat
caaattcctcagaatgggttattgtcccctcagttaatgtccccccggcagctacagcag
cagagattgcatccttcagttcaaccatctttagctcatttttctgcactgcgttcccaa
tttaattcctttccttcaccttcccatccgggtaagtatggatcggctgattcgagagat
tcaagatctaagtcatcaaataaaggtagacagaatgtgcgcttttctcaacaagcctct
gaagctggtagccaaaaaagtgagagtaatgtttccaagttcagatctaagtacatgact
ggtgatgaaatagagagcatcctgaaaatgcagcatcccgcaacacatggcaatgatccg
tatgtggacgattattatcaccaagctcggcttgcaaagaaagcagctgagtcgaggtca
aaatatcgtttttgtccaaacaaggagcaaccttcacggtcacgtaatagcacagagtca
cagcctcatctccatgttgatgctaaggggcagatttcattttcctccattcgcaggcct
cgtcctcttcttgaatatgatccacccggatttgtatgtaatggcagtggtgaacatgac
atgtctgagaaacctttagagcaggaaccaatgcttgcagctagaattacaatagaggat
ggtttctatcttctccttgaggttgatgacatcgacaggctacttcagtttagtcagccg
caagatggaggtgctcagctgaggcggaagcggcagatcctgttggaaggcatggctgcc
tcacttcagcttgttgacccgcttggaaaaagtgggagttcagttgggcttacccctaaa
gatgacattgtgttcttatggctggtgtctcttccaaaaggccggaaactcatttcaagg
tatcttcagcttctggcacccggtggcgagcttgcaagaatagtttgcatggcaattttt
cggcatttaaggtttttgtttggcagtcatccacctaatccaggagccactgagacgatc
actaattttgcaaaaacagtctctgtatgtacccgtggcatggaccttaatttgcttagt
gcttgtctagctgctgttgtttgttcctcagagcagccgcctcttcgtcctcttggaagc
cctgctggagatggagcctctattattcttaaatctgttcttgaaaaggcaactcatctc
ttgactgatcctcaggctgttagcagcttcagcatgcctaatcctgctctttggcaggca
tcatttgatgccttttttggcttacttactaagtattgcttgagtaagtacgactcaata
atgcaatcgatacttccacagactcagtcaaacacagagacgtttgatgcagaagctgca
agagctgtaagcagagagatgccggtcgaacttttacgtgctagtctcccgcacacaaat
gagcagcagaggaagctgttgttgaattttgctcagaggtccatgcctgtgactggatcc
aatgctcacggtggaagcactggacaaataagtcctgaatctgtaagctgttag
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