Nicotiana tabacum (common tobacco): 107829893
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Entry
107829893 CDS
T04643
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107829893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107829893
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107829893
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
OB_HELZ2
Rrp44_S1
CSD2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
107829893
NCBI-ProteinID:
XP_016512855
UniProt:
A0A1S4DHK8
LinkDB
All DBs
Position
3:147290311..147315352
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AA seq
931 aa
AA seq
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MLKSRAFTRQTRQGRVLKEVREHYLRDDIYCGAPFCDKGCDKSSARLSASRSTILVLDTN
VVLNQIDLLENPAIDNVVVLSVVLAEVKNKNIAVYNRLRALCSNSLRNFFVFSNEYHKDT
YVEALAGESPNDRNDRAIRVAAKWYHDHLGTGVSVLLITNDRENKKKAIDEGISAETVEC
YVKSLGQVELLDLIVQPPSEDVNMEDVEDLRPSKRKVIYNEHKPMSEVTSGLLRGLFHQG
KLRVNRFNPFEAYVGSESIGDEIIIYGRANMNRAFDGDIVAVELLPQEQWHEEKSLALAD
EDEEEDVHLAPNSADDAPRVVNQGQTASEEMKPSRPTGRVVGIIKRNWHSYCGSLEPMPM
PGGNGGLAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDRLSRYPTGHYVRTIG
EIGDRDTETEVVLIENDIDARPFSAQVLACLPPLPWSVSSQDLTNPIRQDLRHLRVCSVD
PPGCRDIDDALHCMPLPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDM
LPKPLTEDICSLRADVERLAFSVIWEMTPDAEIISTRYTKSVIKSCAALSYVEAQARMDD
SRLVDPITSDLRNLNGLAKIMRQRRIDRGALTLASAEVKFQIDTETHDPLDIGMYQIREA
NQMVEEFMLAANVAVAEKILKHFPLCSLLRRHPSPTKEMLEPLLHTAEAVGLSLDVTSSK
ALADSLDRAVGDDPYFNKLIRILATRCMTQAVYFCSGDLSPPEYLHYGLASPLYTHFTSP
IRRYADVIVHRLLAASLGIYKLPGVFQDRPKLTSISDNLNYRHRNAQMASRASVELHTLI
FFRKRPTDTEARIVKIRSNGFIVFVPKYGIEGPVYLTSKGENAGEWSADEKQQRIRKVDG
SVSYGVLGTVRIHMEVVEPQPNRPKLQLTLV
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagagcagagcattcacgcgccaaacaagacaaggcagagtactgaaggaagtt
agggaacactatttacgagacgatatttattgcggagctccattttgcgacaaaggttgt
gacaagtcatctgcccgcttaagcgcctctcgctccactattcttgttcttgacaccaac
gttgttctcaaccagattgatttgctggagaatcccgctattgacaatgtggtagtgtta
tccgtggtattggccgaggtcaagaacaagaatattgcggtttataacagactcagggct
ctttgtagcaattctttaaggaacttctttgtcttttctaatgaatatcacaaggatact
tatgtggaggccctggctggtgaaagcccgaatgatcggaacgatagagccattagggtc
gcagctaaatggtatcatgatcatcttggcaccggagtaagtgtcttgctaattacgaat
gatagagaaaacaagaagaaggcaattgatgagggcatttctgcagagacagttgagtgt
tatgtaaagtcgcttggtcaggtggaattgcttgacctaatagttcagcctccttctgaa
gacgttaatatggaggatgttgaggatttgaggccttcaaagcgaaaagtcatttataat
gagcataaacccatgtcagaagttacttcgggtttgcttcggggacttttccaccagggg
aaacttcgtgttaaccgttttaatccatttgaagcatatgttggtagtgaaagcattggt
gatgagataattatatatgggcgtgcaaatatgaatagggcttttgatggtgatatagtg
gcggttgagcttttgcctcaagaacagtggcatgaggagaagtctttggcattagctgat
gaagacgaagaagaagatgttcatttagctccaaatagcgctgatgatgctcctagagtt
gtgaatcaagggcaaactgcatctgaggaaatgaaaccttctcgcccaactggtcgtgtt
gttggtatcataaagcggaactggcactcttactgtggatccttggagccaatgcctatg
ccaggaggtaatggtggtcttgcccatgccttatttgtatccaaagaccgcagaatccct
aagatacggatacaaactcgtcagttgggaaatttgctggataagcggattatcgttgcg
gttgattcatgggatcgtttgtcccgatatccaaccggtcactatgtcaggacaattgga
gaaataggtgatagggatactgaaacagaggtggtattgatagagaatgatatagatgcc
agaccattttctgctcaagtgttggcatgcttgccaccgttaccttggtctgtgtcttct
caagatttgacaaatcctattagacaggatctgcgtcatctgcgtgtatgtagtgtggac
cctcctggatgcagggatattgatgatgcattgcattgtatgcctcttccaaatggaaat
tttgaagtgggagttcatattgctgatgttactaattttgttcatcctggaactccactt
gatgatgaggcttcacaaagaggcacttctgtatatcttgtagagcgtcgaatcgacatg
cttccaaaacctcttacagaagatatttgttcacttcgtgctgatgttgaaagactagct
ttctcagttatctgggaaatgacacctgatgccgagattatttctactagatacactaaa
agcgtgattaaatcttgtgcagcattatcctatgtcgaggctcaagcgagaatggatgac
agtcgcttggtggatccaataacttcagatttacgaaatttgaatgggttagccaagata
atgaggcaaagacgcattgataggggtgcactgacacttgcttctgctgaagtcaaattt
cagattgatactgaaactcatgaccctcttgatatcggaatgtatcagattcgtgaagca
aaccaaatggttgaagagtttatgcttgctgctaacgtagcagttgctgaaaaaatcctg
aagcattttcctctctgttctctactaagacgccatcctagcccaaccaaagaaatgctt
gagcctcttctccacacagctgaagcagttggtcttagcttggatgtgacatcatccaaa
gcattggctgactctctggatcgggccgtgggtgatgatccatacttcaacaagctgatt
cggattctggcaaccagatgcatgacacaggcggtttacttctgtagtggagaccttagt
cctccggaatatcttcattatggtcttgcctctccactttatactcatttcacctcgccc
attagaagatatgctgatgtaatcgttcatcggttgcttgctgcatctttgggaatatat
aagcttcctggtgttttccaagatagacccaagctaactagtatttcggacaatctaaat
tatcggcataggaatgctcagatggccagcagagcatcagtagaactccatactctcatt
ttcttcaggaagcggccgacagataccgaggcgagaattgtgaaaataagatccaatggc
ttcattgtctttgtgcccaagtatggtattgaagggcctgtttacttgacatcaaaaggc
gaaaatgcaggggaatggtcagccgatgagaaacaacagagaatacggaaggttgatggg
agtgtctcttatggtgtgcttggaacagtgaggattcatatggaggttgttgagcctcag
cctaatcggcctaaactccaacttacccttgtatga
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