Nicotiana tabacum (common tobacco): 107830836
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Entry
107830836 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107830836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107830836
03041 Spliceosome [BR:
nta03041
]
107830836
03009 Ribosome biogenesis [BR:
nta03009
]
107830836
03016 Transfer RNA biogenesis [BR:
nta03016
]
107830836
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107830836
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107830836
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107830836
Complex C
U4/U6.U5 tri-SnRNP related factors
107830836
Ribosome biogenesis [BR:
nta03009
]
Eukaryotic type
Pre-60S particles
Helicases
107830836
Transfer RNA biogenesis [BR:
nta03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107830836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
107830836
NCBI-ProteinID:
XP_016513986
UniProt:
A0A1S4DKT1
LinkDB
All DBs
Position
Un
AA seq
993 aa
AA seq
DB search
MGSFKRKSQEFSNNEGNIILPPSKQMKQSGLVDEAVACVHDVSYPEGYIPSAASTLPQQD
SKPAKEFPFTLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMSLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYNGSDVIREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALVPANEGDKKRENGKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVNIETI
FWSAMDILSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPPTVKSMLKGSADALNSAFHLSYNMLLNQIRCKDADPKDLLRDSFYQFQADRAIPDLEK
QAKILEEERDSIVIEEEDSLERYYSLLEQYKSLKKDVRNIVLSPKYCLPFLQPGRLVCIE
CTKIDDDVPTFSIKEEVTWGVIINFERVKGLSEDDANKKPEDANYTIDVLTRCIVQKDEV
GRKTIKIVPLKNAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLKRF
SREGMPLLHPEDDMKVQSSTYRKASSKIEALESLFEEHKIATSPLIKEKLKVLHKKKELT
GKIRSIKRAMRTSKALAFKDELKARKRVLRRLGYIKSDDVLESKGNVVCLISSADELTLS
ELMYNGTFEKIKVEELVSLLSCFVWQEKLQDTQKPREELELLFAQLQDTARRVAKVQLES
KVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIE
AAKAVGDEKHEAKFKEAVAKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcgcaagaattctcaaataatgagggtaatattatactt
cctccaagtaaacagatgaaacaaagtggtttagtggatgaagcagttgcatgtgtgcat
gatgtatcatacccagaaggctatattccctctgctgcttcaactttgcctcaacaagac
tcaaaacctgctaaagagttcccttttacccttgacccttttcaatccgaagctatcaat
tgccttaataatggcgaatccgtcatggtatcagcacacacgtcagctggaaagacagtt
gttgcattgtatgcgattgccatgtcgctgaagaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtttgatgaccggagatgtcacgattgatccaaatgcttcttgcttggtaatgactaca
gagatctggcgtagtatgcagtacaacggatcagatgttataagggaggtggcttgggtt
atttttgatgaggtacattacatgcgtgacagagaaagaggtgtggtttgggaggaaagt
attgttatggccccgaaaaattctcgttttgtgttcctctcggccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttatacg
gactacagacccacaccacttcagcattatatatttccttctggtggtgatggattatac
ttggtggttgatgaaaaagggaagtttcgtgaggatagttttcagaaagctttaaatgct
ctagttccagccaatgaaggggataagaaaagagagaacggcaagtggcagaagggtctg
gttgttggcaaatctggtgaagatagtgacatattcaagatggttaaaatgattattcag
cggcaatatgatcctgtaatatgtttcagcttcagcaaaagagagtgtgaatttctagca
atgcagatggctaaaatggatcttaacaatgatgatgagaaggtgaatattgaaactatt
ttttggagtgctatggacattttatcggatgatgataaaaagctaccgcaggtttcaaat
atgcttccccttttgaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccacagag
accttcagtataggtctgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaagtttaggtggatatccagtggtgagtatattcagatgagtggtcgt
gctggtcgtcgggggattgatgaacgtgggatctgcatccttatggttgatgagaagctt
gaacctcctacagtgaaatccatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtgtaaagatgctgatcctaaagat
cttctccgtgactcgttctatcaatttcaagcagatcgtgcaattcctgatcttgagaaa
caagcaaaaattcttgaagaggagagagactcaattgtgattgaagaagaagatagcctt
gagagatactatagtcttctagaacaatataagagcttaaagaaggatgtacgtaacatt
gttttatctccaaaatattgcttgccattcttgcagcctggtaggcttgtatgcattgag
tgtacgaagattgatgatgatgttccaaccttctccatcaaagaagaggtcacatgggga
gtaataattaattttgaaagggtgaaaggtctttctgaagatgatgcaaacaaaaaaccg
gaggatgcaaactatacgatagatgtacttacgagatgtatagtgcagaaggatgaggtt
ggtagaaagacaattaaaattgtcccgttgaagaatgccggggaaccagctgttgtttct
cttcctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcggaagttcgagaaaatacactaaagaaggtttctgaagttctcaaaagattt
tcaagagagggcatgcctctcttacacccggaagatgacatgaaggttcaaagtagcacg
tacaggaaggcttcaagtaagatagaagccttggagagtctgtttgaagagcacaagata
gcaacgtctcccctcataaaagaaaagcttaaggttttgcataagaagaaagaacttact
ggcaaaatcagatcaattaagagagcaatgcgtacttcaaaagccttagcgttcaaagat
gaacttaaagcaaggaaaagagttctcaggagactcggatacatcaaaagtgatgatgtc
ctggagtctaaagggaacgttgtctgtttaatcagcagcgcagatgagttgaccttgagt
gaattgatgtataatgggaccttcgagaaaattaaagtggaggagcttgtctctcttctc
tcttgttttgtgtggcaagaaaagcttcaggatactcagaagcccagagaagagctagag
ttgctctttgcgcagttacaagatacagctcgaagggttgcaaaagttcagctcgagagc
aaggtccaaatagacgttgagaactttgtgagttcattccggcctgatatcatggaggct
gtctatgcgtgggctaaaggatctaagttttatgaaataatggagattactcaggtgttt
gagggcagtttaatcagggctatcaggagactggaggaagttcttcagcagctaatagaa
gctgcaaaagccgttggggatgaaaagcatgaggcaaaatttaaagaggctgtagccaag
atcaagagggacattgtctttgcggcatctctgtatttgtag
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