Nicotiana tabacum (common tobacco): 107832518
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Entry
107832518 CDS
T04643
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03013
Nucleocytoplasmic transport
nta03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107832518
03015 mRNA surveillance pathway
107832518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nta03019
]
107832518
Messenger RNA biogenesis [BR:
nta03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107832518
mRNA cycle factors
P-body specific factors
107832518
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
107832518
NCBI-ProteinID:
XP_016515866
UniProt:
A0A1S4DR07
LinkDB
All DBs
Position
Un
AA seq
1191 aa
AA seq
DB search
MEHPEDERRVGVEHPEKHEDEEAVARHEEYKKSVEAKMALRQINLNPERPDTGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEELRGVNLSKFVSEAVTAICDAKLRSTDIQAAVQIC
SLLHQRYKDFSPTLVQGLVKVFFPGKATEDVDVDKNARAMKKRSTLKLLLELYFVGVVDD
TGIFMNIVKDLTNVEHLKDRDATQTNLSLLASFARQGRYLLGLPLSGQDILEEFFKALNV
TTDQKRFFRKVFQTYYDAAVELLQSEHASLRQMEHENAKTLSAKGELNEENAFAYEKQRK
AYDQLYRGISGLAEALDMQPPVMPEDGHTTRVTSGDDASSPGASKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKSSEQPLKAQEHSIDSASEADEAQTAAVETAEGVVDA
GAVQEDRNDKGRDKDEKDKEKTKDKETDKEKAKEKEAERKGEGDKEKARGVEGANLDGLL
QRLPSCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCM
KDVSSMLLQLLEEEFSFLINKKDQMNIETKIRNIRFIGELCKFRMAPPGLVFSCLKACLD
EFSHHNIDVACNLLETCGRFLYRSPETAIRMANMLEILMRLKNVKNLDPRHITLVENAYY
LCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEAYLLKCFMK
VHRGKYGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRVGLELNDFGMQQRRIAHMRFL
GELYNYELVDSSVIFDTLYLILVFGHETSEQDVLDPPEDCFRIRMVVTLLETCGHYFDRG
SSKRKLDRFLIHFQRYILNKGVLPLDIEFDLQDLFAELRPNMMRYASIEEVNAALVDLEE
HERIVNVEKANNEKHSDSEKIPSRTTSGMSVNGKSLANGIEENGLHEEIMETESDSENGT
IEHVGHDDDEETDDGNRDERGDTEDESDDGDGPGSDEEDEVHVRSKVAGADPLEEAEFER
ELRALMQESLDSRKLELRGRPTLNMMIPMNVFEGPSKDHRGVEGESGDETLDEGAGGSKE
VPVKVLVKRGSKQQTKKMLIPRDCSLIQSTKQKEAAELEEKQDIKRLVLEYNDREEEELN
GLGNQPPSWTQNSGSRVAHRGNTWDAPGRGSGSRHRYLYHSGGGLYYGRRR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaacatcctgaggatgaacgtcgtgttggagtggaacacccggagaaacatgaagat
gaggaggctgtggctcgtcacgaggaatacaaaaaatctgttgaggcaaagatggctctg
aggcagattaatttgaatccagaaaggccagacactggttttctcaggacgttggattct
agtattaagcgcaatactgcagttattaaaaagctaaaacagattaatgaagagcagcga
gaaggtttgatggaagagttgcgcggtgtcaacttaagcaagtttgtaagtgaagcagtg
actgctatatgtgatgcaaagcttcggtccacagacatacaagctgcagtgcagatctgt
tctctgcttcatcagcggtacaaggacttttcaccaactcttgttcaaggccttgtgaaa
gttttctttcctggaaaagctacagaggatgtagatgtagacaagaatgcgagggctatg
aaaaagcgtagcactttaaaacttcttttggaactttactttgtcggagttgttgacgat
actggcatctttatgaatattgttaaggacctcaccaatgttgaacatctgaaggatcgt
gatgcaactcagactaatttgtcactccttgctagctttgctcggcaaggaagatacctg
cttgggcttccattgtctggccaagatattcttgaagagtttttcaaggcccttaatgtg
acaactgatcagaaaaggttctttaggaaggtgttccaaacatattatgacgcagccgta
gaacttcttcagtcagagcatgcttcacttcggcaaatggagcatgaaaatgcaaagact
ttatctgccaaaggtgaactgaatgaggagaatgcttttgcatatgaaaagcagcggaaa
gcttatgaccagctgtatcgtggcatctcaggactggcagaagcacttgacatgcaacct
ccggtgatgcctgaggatggtcatacaaccagggtaacatcaggggacgatgcatcatcc
cctggtgccagtaaagattcttctgtccttgaagccctgtgggatgatgaagatacaagg
gctttctatgagtgtctcccagatctcagagcatttgttccagctgtattacttggagaa
gcagaaccaaagtcgagtgaacagcctctgaaggcgcaagagcattcgattgattcagca
agtgaagcagatgaagctcagactgctgcagtagagactgcagagggtgttgtagatgct
ggagctgtgcaggaggacagaaatgataaaggcagggataaagatgagaaggataaagag
aagaccaaggataaagagactgataaggaaaaagcaaaagaaaaggaagctgaaagaaaa
ggagaaggtgacaaggagaaagcaagaggtgtcgaaggagctaatctagatggtctgctt
cagcggctacccagttgtgttagccgtgatttgattgaccagttgacagtggagttttgc
tatctgaattccaagtccaataggaaaaagcttgttagagcattgttcaatgtccccagg
acatcactagagttgttgccatactactcacgcatggtggccactctgtcaacttgcatg
aaggacgtgtcgtccatgcttttacagttgttggaagaggagttcagctttctgataaat
aaaaaggatcaaatgaatatagaaacaaaaataaggaatattcgttttattggagagctc
tgcaaatttagaatggcaccacctggccttgtcttcagttgtctaaaggcttgtttggat
gaattcagtcatcacaatattgatgttgcttgcaatcttctcgagacatgtgggcgtttt
ctttaccgatctcctgaaactgcaatacgcatggcaaacatgttagagatattaatgcgt
ctgaagaatgttaaaaatttggaccctcgccacattaccttagtggagaatgcatattac
ttatgcaagccaccggaaagatctgctcgagtgtctaaagttcggcctcctttgcatcag
tacataagaaaattgctcttttcggatcttgacaagtcttcaatagagcatgtgctcaga
cagcttcgtaagcttccttggagtgaatgcgaggcatacctcttgaagtgtttcatgaag
gttcacaggggcaagtatggtcagattcatttgattgcatcacttactgctggtttaagt
cgctatcatgatgattttgctgttgccgttgttgatgaggttctggaggagatcagggtg
ggattagagttgaatgactttgggatgcagcaaagacgtattgctcacatgcgtttccta
ggggaattatataactatgaacttgttgattcctctgttatatttgacacgctctatttg
attctcgtttttggccatgaaacatctgagcaagatgtgctggatcctcccgaggattgt
ttccgtatcaggatggttgttacactacttgaaacctgtgggcactactttgatcgaggt
tcatcgaagcgaaaacttgatcgcttcctaatacatttccagaggtacatattgaacaaa
ggtgtactccccctggatatagagtttgatttgcaggacttatttgccgaattacgtcct
aacatgatgagatatgcatcaattgaagaagtcaatgctgctttagttgaccttgaggag
catgagcgcatagttaatgtggaaaaagccaacaatgagaagcattctgacagcgagaaa
attcccagcaggacaacctctggaatgtctgtaaatggtaaaagccttgcgaatggcatt
gaagaaaatggattgcatgaagagatcatggagactgaaagtgattccgagaatggcacc
attgagcatgtgggtcacgatgatgatgaagagacagatgatgggaatcgggatgagagg
ggtgacactgaggatgaatctgatgatggtgatggacctggttcggatgaggaggatgaa
gtacatgtcaggtcaaaggttgcaggggctgatcctctggaggaggcagaatttgagaga
gagcttcgggctctgatgcaggaaagtttggattcaagaaaattggaattacggggaagg
cctacactaaacatgatgataccaatgaatgtctttgaggggccatccaaggaccatcgc
ggggttgaaggagagagtggtgatgaaacgttggatgaaggagctggaggaagtaaggag
gttccagtgaaggttcttgtgaagcgaggtagtaagcagcagacaaagaaaatgctcatt
cctcgtgattgctcactcattcagagcacaaaacagaaagaagcagctgagcttgaagaa
aagcaagacatcaagaggctggttctggagtacaatgatagagaggaagaagagcttaat
gggttagggaatcagccaccaagctggacacaaaacagtgggagcagagttgctcatagg
ggcaacacatgggatgcgcctggcaggggcagtgggtcacgtcatcgctatctgtatcat
tcaggtggcgggctttattatggcagaagaagatga
DBGET
integrated database retrieval system
