Nicotiana tabacum (common tobacco): 142161633
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Entry
142161633 CDS
T04643
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03022
Basal transcription factors
nta03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
142161633
09124 Replication and repair
03420 Nucleotide excision repair
142161633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nta03021
]
142161633
03036 Chromosome and associated proteins [BR:
nta03036
]
142161633
03400 DNA repair and recombination proteins [BR:
nta03400
]
142161633
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
142161633
Transcription machinery [BR:
nta03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
142161633
Chromosome and associated proteins [BR:
nta03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
142161633
DNA repair and recombination proteins [BR:
nta03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
142161633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
AAA_11
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
142161633
NCBI-ProteinID:
XP_075089982
UniProt:
A0AC58SYE5
LinkDB
All DBs
Position
17:3929667..3937122
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQLEDITVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR
LSKPSSPIKLLYCTRTVHEMEKTLAELKLLYNYQLQQFGPGARMLAIGLSSRKNLCVNPN
VVSAENRDSVDAGCRKLTASWARALAIENPNVPTCPFFENYDAADKAGTSTLPAGVYTLQ
ELRMYGKEKGWCPYFLARHMVQQANVVVYSYQYLLDPKVAGIISKEMERECVVVFDEAHN
IDNVCIEALSVSVRKQTLEGATRNLSRMSQEIERLKATDAGRLRAEYNRLVEGLAQRLPA
QDVWLANPALPDDIMKEAVPGNIRRAEHFLSVLRRFVQYLKGRLDTENVEKEGPVAFVAS
ITTQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHVQTICDLATLVGTYSRGFSIIIEP
FDERMPHIPDPVLQLTCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWHESGILKDIMQHKLVFIETQDVVETTLALDNYRRACDSGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVYIAKEF
LRKMAQPYDKNGALGKKTLLSQKDLENMITGPDGEMLL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccaattagaagacataacagtttacttcccatatgacaacatatacccagaa
caatactcatacatgttagaactcaaaagggccttagatgcaaaaggccattgtcttctt
gaaatgccaacaggcactggaaaaaccatagctttactttccttaatcacaagttacaga
ctttcaaaaccctcaagcccaattaagcttctttactgtacaagaactgtacatgagatg
gaaaaaacattagccgagcttaaattattgtataattatcagttgcagcagttcgggccg
ggggcccggatgctggcaatcgggctttcgtcaaggaagaatttgtgtgtgaacccgaat
gttgtttctgctgagaatagagattctgttgatgctggttgtaggaaattgactgctagt
tgggctagagcacttgctattgaaaaccctaatgttccaacttgtccattttttgagaat
tatgatgctgctgataaggctggtacttccactttgcctgctggcgtttatactttgcag
gagttaaggatgtacggtaaggaaaaaggttggtgcccatactttttagcgcggcatatg
gtgcagcaggcaaatgttgtggtttatagctaccaatacctgcttgatcccaaggttgct
ggtattatatcaaaggagatggagagagagtgtgttgtggtgtttgatgaggcccataat
atagacaatgtatgcattgaggcacttagtgttagtgtgaggaagcagacgcttgaaggg
gcaacaaggaatctcagtaggatgtctcaggaaattgaaaggctgaaggccactgatgct
ggtcgattgcgagcagagtataatcgtcttgttgagggtctagcacaaagactgcctgct
caggatgtatggcttgctaatcctgccttacctgatgacatcatgaaggaagcggtgcct
ggaaatataaggcgagcagagcacttcttatctgttttgcgaagatttgtccagtatctt
aaagggcgtcttgacactgaaaatgtggaaaaggagggtcctgttgcctttgttgcttct
attactacacaagttggaatcgaccaaaagatgttaaaattttgttatgataggcttcac
tctcttatgttaaccctggagataactgatacagatgagtttctgcatgtgcaaactatt
tgtgaccttgcaacgttggtagggacgtactctcggggcttttcaattataattgaacct
tttgacgagagaatgccacatattcctgatcctgtccttcagcttacctgtcacgatgct
tctctcgccataaagcccgtttttgaacgattccaatctgttgttattacatccgggacc
cttagtccaattgatctctacccgcgtcttctcaatttcaatccggtagttagtcgaagc
ttcaagatgtctttgacaagggattgcatatgcccaatggtccttacacggggaagtgat
cagcttccagtaagcacaaagtatgatctgagaagtgatcctggcgtcgagaaaaattat
gggaagcttttgctagaaatggtgtctgtcgttccagatggcgttgtctgtttctttgtc
agttactcttatatggatggaattgtcaatagttggcatgaatcaggaatattaaaggat
ataatgcaacataaactcgtatttattgagacccaggatgttgtagagactacattggct
ttggataattatcgcagggcttgtgatagtgggaggggtgctgttttcttttcggttgct
aggggaaaagtagctgaaggtatagactttgatagacactacggcaggcttgtgatcatg
tttggtgttcctttccaatatacactaagcagaatattacttgcacgattggagtatctt
agggagactttccagataaaagagggcgattttcttacctttgatgctttgaggcaagct
gctcaatgtgtggggcgagttatccgttcaaaggcagattatggcatgatgatttttgct
gacaaaagatatagccgtcatgataagcggtctaagttgcctggatggatactttctcat
ttacgggatgctcacttgaacttgagtacagacatggccgtgtacatagcaaaagagttc
ttgaggaaaatggctcagccatatgataagaacggtgcattgggcaagaaaactcttttg
tcacaaaaagacttggagaatatgatcactggccctgatggagagatgttgctttag
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integrated database retrieval system
