Nicotiana tabacum (common tobacco): 142166916
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Entry
142166916 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142166916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
142166916
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142166916
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142166916
Complex C
U5 SnRNP specific factors
142166916
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
142166916
NCBI-ProteinID:
XP_075082865
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All DBs
Position
12:104695365..104702258
Genome browser
AA seq
2116 aa
AA seq
DB search
MGHLEAQAVYEYGANSPESLYGKIDPKTFGDRAYKGRPDKAARKREPLLVSDWHRQSKKR
RLLESVLTSTEEEGVYQPKTKQTRAAYEALLSLIQQQLGDQPLNIVTAAADEILAVLKND
YFTNPDKKKKQIENLLNSVSNEVFDQLVSIGRLITDYQGDGDGDAPLDDDVGVAVQFEEN
EEEEEESDLDDEEDEDNDVLDADCSSAMPIIADYEMREADDGMSLNVQDVDAYWLQRKIS
RAYEPQIDPQQSQKLAEEVLKTLAEGDDREVETKLLLHLQFDKFTLIKYLLRNRLKVVWC
TRLARAEDQAKRKEIEQEMLRLGPDHAAVLEQLHATRSTAKERQLHLEKNIREEARHLKD
GDRDNDNAWLMGQHQLLNLDSLAFPQGSLSMANKKCELPVGSYRNHKKGYEEVHVPALKP
KPLAPGEELVKISSIPVWAQPAFSGMTQLNRVQSKVYETALFSPENILLCAPTGAGKTNV
AMLTILQQIALNRNLDGSFNHTNYKIVYVAPMKALVSEVVGNLSKRLEHYGVKVKELSGD
QTLTHQQIEGTQIIVTTPEKWDIITRKLGNRTYMQLVKLVIIDEIHLLHDNRGPVLESII
ARTIRQIEITKEHIRLVGLSATLPNYQDVALFLRVDLNKGLFHFDNSYRPVPLAQQYIGI
TVKKPLQRFQLMNDICYEKVISVAGKHQVLIFVHSRKETTKTAQAIRHAALGNDTLTKFL
KEDGLTREILQSQTELIKSNDLKDLLPYGFAIHHAGLVRTDRQLVEELFADGHVQVLVST
ATLAWGVNLPAHTVIIKGTKIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIIITG
HSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNVKEACKWLLYTYLYVRMVQN
PTLYGLAADALETDYALEGRRADLVYSAATLLDKSNLVKYDKRSGYFQVTDLGRIASYYY
ITHGTISTYNEHLKPITGDIELCRLFSLSEEFKYVTVRQDEKIELAKLLDRVPIPIKESL
EEPRTKINVLLQAYISRLKLEGLSLSSDMVYISQSAARLMRALFEIVLKRGWAKLAEKTL
KWCKMISKRMWSVQTPLRQFHDISNEILMKLEKKDLAWEHYYDLSSQELGEFIRFPKKGR
MLDKCIHQFPKLNLAAHVQPITRSVLRVELTITPDFQWEDAVHGFVEPFWVIVEDNDGEY
ILHHEYFMLKKQYIDKDQTLNFTVPIYEPLPLQYFIRVVSDRWLGSETVLPVSFLHLTLP
EKYLPPTELLDLQPLPVTALRHPAYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPTG
SGKTICAEFAILRNHQKGPDNISRTVYIAPLEALAKERFSDWKKKFGDSLGIRVVKLIGE
TAKDLKLLEKGQLIISTPVKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPILEVIV
SRMRYISSRVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPSGVRPVPLDIHIQDVD
IANFEARMQAMTKHTYTAIVQHARKGKPAIVYVPTRKHARLTAVDLMSYSSMDREDTPMF
LLRSAEELEPFVERINEPMLKETLKYGVGYLHDGLSGTDQEIVKTLFETGWIQVCVMNST
MCWGVPLSAHLVVVTGTQYYDGRENMHTDYPVTDLLKMMGHASRPLVDSCGKCVILCHTP
RKDYYKKFLYDAFPVESHLQHYVHDNLIAEVVVGVIQNKQDAVDYLTWTFMYRRLPQNPN
YYNLQGVSHRHLSDHLSELVENAISDLEASKCVAVEDDFLLSPLNLGMIASYYYISYTTI
ERFSSSLSSKTKLKGLLEILASASEYKRLPIRPGEEELTRRLINHQRFSFENPKYTDPHT
QANALLQAHFSRQVVGGNLASDQQEVLLSAIRLLQAMVDVISSNKWLSLALLAMEVSQMV
TQGMWEHDSILLQVPHFTNELAKKCQENPGKSIETVFDLMEMEDDERRELLQMSDLQLMD
VARFCNRFPNIDLTYDVLNRDNVSAGGDVSVQVTLERDLEGGTEVGPVFAPRYPTTKEEG
WWLVVGDTKSNQLLAIKRVTLQRKSSVKLNFSAPAEAGKRTYTLYFMCDSYLGCDQEYIL
TLDVKAAMIKEDSERV
NT seq
6351 nt
NT seq
+upstream
nt +downstream
nt
atgggccatttggaagcacaagcagtgtatgaatacggagccaactcacctgagtctctt
tatgggaaaatagaccccaaaacatttggtgatcgtgcttacaagggtagacctgacaag
gctgctaggaagcgcgaaccactacttgtctctgattggcatagacaaagcaagaagaga
cggttacttgaaagtgttcttacttcaactgaggaagaaggtgtttaccagcctaaaacc
aagcaaacgagggctgcttatgaggccctgctcagcctcattcagcagcaacttggtgac
caaccattgaatattgttactgctgcagctgatgagatattggctgtcttaaaaaatgac
tactttaccaaccctgataagaagaaaaaacagattgaaaacctgttaaattccgtatca
aatgaggtgtttgaccagttggtgtcgattgggcgactcatcactgattatcaaggtgat
ggcgatggcgatgcacctctggatgatgatgttggtgtagctgttcagtttgaggagaat
gaagaagaagaagaagagagtgaccttgatgatgaagaggatgaggacaatgatgtgctg
gatgccgactgttctagtgctatgcctatcattgctgattatgagatgcgtgaggcggat
gacggaatgtccttgaatgttcaggacgtagatgcttattggcttcaaagaaagatctct
cgagcttatgagccccagatcgatccgcaacagagccaaaagcttgctgaagaggttctc
aaaactcttgctgaaggcgatgatcgtgaagtagaaaccaagctactgttgcatctccaa
tttgataagttcactctcatcaaatatcttctgcggaaccggctaaaggtagtatggtgt
acccgtcttgcacgggctgaagaccaagcgaaaaggaaggaaattgaacaagagatgttg
cggttggggccagatcatgccgcggtactagagcagttgcatgctactaggtctactgca
aaagagaggcaactgcatttggagaaaaacattagggaagaagctcggcatctcaaagat
ggtgacagagataatgataatgcttggttaatggggcaacaccagctgcttaatcttgac
agccttgcatttcctcaaggtagtctgtcgatggcaaataaaaaatgcgagcttccagtg
gggtcttataggaatcataagaaggggtatgaggaagttcacgtgccagcactgaagcca
aagccactagcccctggagaagagcttgtgaagatctcctccattccggtgtgggctcaa
ccagcgttcagtgggatgacccaattgaatagggttcagagtaaagtatatgagactgcc
ctcttttccccagagaacatcttgctctgtgctccaacgggtgctgggaagaccaatgta
gctatgctcactatacttcagcaaatcgctctaaaccgcaacttagatggatcattcaac
cacaccaattataagattgtgtatgtggcacctatgaaagcccttgtttctgaagtggtt
ggcaatctctccaagcgtttggaacattacggtgtcaaggtaaaagagttgagcggtgat
caaacattaactcatcaacagattgaagggactcaaattattgtgactacccctgagaag
tgggatattataactagaaagttaggtaatcgcacttatatgcagcttgttaaacttgtt
attatagatgagatacatctcctgcatgacaatcgaggtcctgttttggagagtatcatt
gcaagaactatcagacagattgaaatcacaaaagagcatattcggcttgttggattgtca
gcaactcttccaaattatcaggatgtggctttgtttttgcgagttgatctgaataaagga
ctcttccattttgacaatagctatagacctgtaccgttggctcaacagtatattggaatt
actgttaagaagccactgcagaggttccagttgatgaatgatatttgctatgagaaggtg
attagtgttgcaggaaagcatcaggtgcttatctttgttcattctaggaaggaaacaact
aaaacagctcaagcaatccggcatgctgcacttggtaatgacacccttactaagtttttg
aaggaggatggtttaactcgggaaattttacagtctcaaactgagcttatcaagagcaat
gatctcaaagatcttttaccatatggttttgcaattcaccatgcgggtttggtcagaact
gatcggcagcttgtggaggagctttttgctgatggacatgtgcaagtgttggtctcaact
gcaactttagcttggggtgtaaatttacctgcacatactgtcattataaaaggtaccaag
atttacaatcctgaaaaaggagcatggactgaactcagtcctcttgatgttatgcaaatg
cttggccgtgctggaaggcctcaatatgacacttatggtgaaggaatcatcataactgga
cacagtgaactgcaatattatctttctttgatgaatcaacagcttcctattgaaagtcag
tttatatccaagttggctgatcaattgaatgcagagattgttcttgggacagtacagaat
gtcaaagaggcatgcaagtggctcctatatacttacctctatgttcgcatggtacagaat
cccacactttatggtctagctgcggatgccctcgaaactgattatgctttggagggaagg
cgtgctgacttggtttattctgctgctacgttgctggacaagagtaacttggttaagtac
gataagagaagtggatatttccaggtgactgacctggggcgcattgcgagctattattac
ataactcatgggacaatttccacgtacaatgagcatttgaagcccatcacgggtgatatt
gaactttgtaggcttttctctctcagtgaggaattcaaatatgtaacagtcagacaagat
gagaaaatagaattggcaaagcttctagatcgtgtccctattccgataaaagagagtctt
gaggagcctagaaccaagatcaatgttctactgcaggcgtatatttcacggctgaagctt
gaagggttgtctctatcatccgacatggtttatatatctcaaagtgctgcacgtctgatg
cgagccctttttgagattgttctgaagagaggatgggctaagttagctgagaagaccttg
aaatggtgcaaaatgataagtaagaggatgtggagcgtacaaacaccactccgccaattc
cacgacatttcaaatgagatattgatgaagttggagaagaaagatcttgcttgggagcat
tattacgatctttcatcacaagagttgggagagtttatccggttcccgaagaagggtaga
atgttagacaagtgtattcatcagttcccgaagctgaacctcgcagcacatgttcagcca
attacccggtcagtcttgagggtagaattgaccattacaccggatttccagtgggaggac
gcggtccatggttttgtagaacctttctgggtgattgttgaagacaatgatggggaatat
attcttcatcatgaatatttcatgctgaagaagcagtatattgataaagaccagactttg
aacttcacagtcccaatatatgagccattgccccttcagtatttcattcgtgttgtctct
gacaggtggctagggtctgagactgttttgccagtctctttcctacacctgactttgcca
gaaaaatatcttcctcccactgagttactagacttacaacctctaccagttactgcattg
aggcatccagcatatgaagcactttatcaagattttaagcatttcaatccggttcagact
caggtattcaccgttttgtacaattcagatgacaatgtcttggttgcagctccaactggt
agtgggaagaccatttgcgctgaatttgccatattgaggaatcatcagaaaggacctgat
aatatcagtcgtactgtgtatatagctccactagaggctctggccaaggagcggttcagt
gattggaagaagaaatttggagactctctgggaattagagttgttaaattaattggggag
actgccaaagatctgaagctgttagagaagggtcagttaattatcagcacgcctgtgaaa
tgggatgctttatctcgtcgctggaaacagcgaaagcatgttcagcaagtcagtcttttc
attattgatgaattacacctgattggtggtcaaggtggcccaatcctggaggtgattgtc
tctcggatgagatatatttcaagccgggttgagaacaagatccgcatcgttgctttgtca
acttccctagctaatgccaaggatttgggagaatggattggggctacatctcatgggctc
ttcaactttccttctggtgttaggcccgtgccactggatattcacattcaagatgttgat
attgccaactttgaagctaggatgcaagccatgacaaaacacacatatactgcaattgtc
caacatgcaaggaaaggaaagcctgcaattgtgtacgttcccacgaggaagcatgcacgc
ctgactgctgttgatctgatgagttattctagtatggacagagaagacacacccatgttt
ctgctacgatctgcagaagagctggagccttttgtggagaggatcaatgaacctatgctg
aaagagacactcaagtatggtgtgggttacttgcatgacggattgagcggcactgatcag
gaaatagtgaagacgttgtttgaaactggatggattcaagtatgtgtaatgaacagtaca
atgtgttggggagtaccactatctgcccatttggtggtggtgacgggaacacagtactat
gatggtagggaaaatatgcacactgattatccagttactgatttgttgaagatgatgggt
catgccagtcgacctcttgtagatagctgtgggaagtgtgtcatcctttgccatacacca
cgcaaggactactacaagaagttcttgtatgatgcattcccagttgaaagccatctgcaa
cactatgtccatgacaatttgattgctgaggtggttgtgggagttattcagaacaagcag
gatgcggtggattacctaacatggaccttcatgtatagaaggctgccacagaatccaaac
tactacaatctgcagggtgttagtcacaggcatctgtcggaccacctctcagagctggtg
gagaatgctatcagtgacttggaggcaagcaaatgcgttgctgttgaggatgactttttg
ctttcacctttgaaccttggcatgatagcgtcatactattatatcagttacacgacaata
gagcgatttagctcttccctgtcctccaaaacgaagttgaagggcttactggaaatattg
gcttcagcgtcggagtataaacggttgcctataagaccaggtgaagaggagttgacaaga
aggttgattaatcaccagcgtttctcctttgagaatccgaaatacacagatcctcacacc
caggctaatgctcttttacaagcccatttttctaggcaagtggtgggtggaaatcttgct
tctgaccagcaagaggtgcttctttctgctattaggctgcttcaagcaatggttgatgtt
atttccagtaacaaatggcttagtctagcacttctagcaatggaggtgagccagatggtg
acacagggaatgtgggaacatgactcgatacttcttcaggttccacactttacaaatgaa
ttggctaagaagtgtcaagaaaatccaggaaagagtatagaaacagtgtttgatttaatg
gagatggaagatgacgagaggcgtgagctcttgcaaatgtcggacttacagcttatggat
gttgcccggttttgtaatcggtttccaaacattgatttgacatatgatgtgttgaaccgt
gataatgtgagtgctggaggcgatgtgagtgtgcaggtaacccttgagcgagatcttgag
ggtggaacagaggttggacctgtttttgcacctagatatcccacaaccaaggaagaagga
tggtggcttgttgttggcgatacaaagagcaaccaactgctggccattaagagagttacc
ctgcaaaggaagtccagtgtcaagctcaatttttctgcacctgcagaagctggaaagagg
acctacacactctatttcatgtgcgattcttatctgggttgtgaccaggagtatattctt
acacttgatgttaaagcggcaatgattaaagaggacagtgaaagagtctga
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integrated database retrieval system
