Nicotiana tabacum (common tobacco): 142166929
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Entry
142166929 CDS
T04643
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
nta
Nicotiana tabacum (common tobacco)
Pathway
nta03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nta00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142166929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nta03041
]
142166929
Enzymes [BR:
nta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
142166929
Spliceosome [BR:
nta03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142166929
Complex C
U5 SnRNP specific factors
142166929
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
142166929
NCBI-ProteinID:
XP_075082916
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All DBs
Position
12:complement(110583839..110590691)
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AA seq
2118 aa
AA seq
DB search
MGHLEAQAVYEYGANSPESLYGKIDPKTFGDRAYKGRPDKAARKREPLLVSDWHRQSKKR
RLLESVLTSTEEEGVYQPKTKQARAAYEAMLSLIQQQLGGQPLNIVTAAADEILAVLKND
YFTNSDKKKDLIDNLLNSVSNEVFDQLVSIGRLITDYQGDGDGDGYAPLDDDVGVAVQFE
ENEEEEEESDLDDEEDEDNDVLDADCSGAMPIIADYEMREADEGMSLNVQDVDAYWLQRK
ISQAYEHQIDPQQSQKLAEEVLKTLAEGDDREVETKLLLHLQFDKFSLIKYLLRNRLKVV
WCTRLARAEDQSKRKEIEQEMLRLGPDHAAVLEQLYATRATAKERQLNLEKNIREEARHL
KDGDRDNDNAWLMGQRRLLDLDSLAFHHGRMSMENTKCELPVGSYRNHRKGYEEVHVPAL
KPKPLAPGEELVKISSIPVWAQPAFSGMTQLNRVQSKVYEAALFSPENILLCAPTGAGKT
NVAMLTILQQIALNHNLDGSFNHTNYKIVYVAPIKALVSEVVGNLSKRLEHYGVKVKELS
GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYMQLVKLVIIDEIHLLHDNRGPVLES
IIARTIRQIEITKEHIRLVGLSATLPNYQDVALFLRVDLNKGLFHFDNSYRPVPLAQQYI
GITVKKPLQRFQLMNDICYEKVINVAGKHQVLIFVHSRKETTKTARAIRHAALGNDTLTK
FLKEDGLTREILQSQTELIKSNDLKDLLPYGFAIHHAGLVRTDRQLVEELFADGHVQVLV
STATLAWGVNLPAHTVIIKGTKIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIII
TGHSELKYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNVKEACKWLLYTYLYVRMV
QNPTLYGLAADALETDYALEGRRADLVYSAATLLDKSNLVKYDKRSGYFQMTDLGRIASY
YYITHGTISTYNEQLKPITGDIELCRLFSLSEEFKYVKVRQDEKIELAKLLDRVPIPIKE
SLEEPSAKINVLLQAYISRLKLEGLSLSSDMVYISQSAARLMRALFEIVLKRGWAKLAEK
ALKLCKMISKRMWSVQTPLRQFHSISNEILMKLEKKDLAWERYYDLSSQELGELIRFPKK
GRTLHKCIHQFPKLNLAAHVQPITRSVLRVELTITPDFQWEDVVHGFVEPFWVIVEDNDG
EYILHHECFMLKKQYIDEDHTLNFTVPIYEPLPLQYFIRVVSDRWLGSETVLPVSFLHLT
LPEKYLPPTELLDLQPLPVTALRHPAYEALYQDFKHFNPVQTQVFTILYNSNDNVLVAAP
TGSGKTICAEFAILRNHQKGPDNISRTVYIAPLEALAKERFSDWKKKFGDSLGIRVVKLT
GETAKDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVGLFIIDELHLIGGQGGPILEV
IVSRMRYISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPSGVRPVPLDIHIQG
VDIANFEARMQAMTKHTYTAIVQHARKGKPAIVYVPTRKHARLTAVDLMSYSSMDREDTP
MFLLRSAEELEPFVERINEPMLKETLKYGVGYLHDGLSGSDQEIVKTLFETGWIQVCVMD
STMCWGVPLSAHLVVVTGTQYYDGRENMHTDYPVTDLLKMMGHASRPLVDSCGKCVILCH
APRKDYYKKFLYDAFPVESHLQHYLHDNLIAEVIVGVIQNKQDAVDYLTWTFMYRRLTQN
PNYYNLQGVSHRHLSDHLSELVENAISDLEASKCVAVEDDFLLSPLNLGMIASYYYISYT
TIERFSSSLTSKTKLKGLLEILASASEYKRLPIRPGEEELTRRLINHQRFSFRNPKYTDH
HTKANALLQAHFSRQVLGGNLASDQQQVLLSAIRLLQAMVDVISRNKWLSLALLAMEVSQ
MVTQGTWAHDSILLQVPHFTNELAKKCQENPGKSIETVFDLVEMEDDERLELLQMSDLQL
MDVARFCNRFPNIDLTYDVLNRDNVSAGDDVSVQVTLERDLEGGTEVGPVFAPRYPTTKE
EGWWLVVGDTKSNQLLAIKRVTLQRKSSVKLNFSAPAEAGTRTYTLYFMCDSYLGCDQEY
TLTLDVKAAMTKEDSERV
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
atgggccatttggaagcacaagcagtgtatgaatacggagccaactcacctgagtctctt
tatgggaaaatagaccccaaaacatttggtgatcgtgcttacaagggtagacctgacaag
gctgctaggaagcgcgaaccactacttgtctctgattggcatagacaaagcaagaagaga
cggttacttgaaagtgttcttacttcaactgaggaagaaggtgtttaccagcctaaaacc
aagcaagctagggctgcttatgaggccatgctcagcctcattcagcagcaacttggtggc
caaccattgaatattgttactgctgcagctgatgagatattggctgtcttaaaaaatgac
tactttaccaactctgataagaagaaagacctgattgacaacctgttaaattccgtatca
aatgaggtgtttgaccagttggtgtcgattgggcgactcatcactgattatcaaggcgat
ggcgatggcgatggctatgcacctctggatgatgatgttggtgtggctgttcagtttgag
gagaatgaagaagaagaagaagagagtgaccttgatgatgaagaggatgaggacaatgat
gtgctggatgccgactgttctggtgctatgcctatcattgctgattatgagatgcgtgag
gcggatgagggaatgtccttgaatgttcaggacgtagatgcttattggcttcaaagaaag
atctctcaagcttatgagcaccagatcgatccgcaacagagccaaaagcttgctgaagag
gttctcaaaactcttgctgaaggcgatgatcgtgaagtagaaaccaagctactgttgcat
ctccaatttgataagttcagtctcatcaaatatcttctgcggaatcggctaaaggtagta
tggtgtacccgtcttgcacgggctgaagaccaatcgaaaaggaaggaaattgaacaagag
atgttgcggttggggccggatcatgccgcggtactagagcagttgtatgctactagggct
actgcaaaagagaggcagctgaatttggagaaaaacattagggaagaggctcggcatctc
aaagatggtgacagagataatgataatgcttggttaatggggcaacgccggctgcttgat
cttgacagccttgcatttcatcatggtagaatgtcgatggaaaatacaaaatgcgagctt
ccagtggggtcttataggaatcataggaaggggtatgaggaagttcacgtgccagcactg
aagccaaagccactagcccctggagaagagcttgtgaagatctcctccattccagtgtgg
gctcaaccagcgttcagtgggatgacccaattgaatagggttcagagtaaagtatatgag
gctgccctcttttccccagagaacatcttgctctgtgctccaacgggtgctgggaagacc
aatgtagctatgctcactatacttcagcaaatcgctctaaaccacaacttagatggatca
ttcaaccacaccaattataagattgtgtatgtggcacctattaaagcccttgtttctgaa
gtggttggcaatctctccaagcgtttggaacattacggtgtcaaggtgaaagagttgagc
ggtgatcaaacattaactcgtcaacagattgaagagactcaaattattgtgactacccct
gagaagtgggatattataactagaaagtcaggtgatcgcacctatatgcagcttgttaaa
cttgttattattgatgagatacatctcctgcatgacaatcgaggtcctgtcttggagagt
atcattgcaagaactatcagacagattgaaatcacaaaagagcatattcggcttgttgga
ttgtcagcaactcttccaaattatcaggatgtggctttgtttttgcgagttgatctgaat
aaaggactcttccattttgacaatagctatagacctgtaccgttggctcaacagtatatt
ggaattactgttaagaagccactgcagaggttccagttgatgaatgatatttgctatgag
aaggtgattaatgttgcaggaaagcatcaggtgcttatttttgttcattctaggaaggaa
acaactaaaacagctcgagcaatccggcatgctgcacttggtaatgacacccttactaag
tttttgaaggaggatggtttaactcgggaaattttacagtctcaaactgagcttatcaag
agcaatgatctcaaagatcttttaccatatggttttgcaattcaccatgcgggtttggtc
agaactgatcggcagcttgtggaggagctttttgctgatggacatgtgcaagtgttggtc
tcaactgcaactttagcatggggtgtaaatttacctgcacatactgtcattataaaaggt
accaagatttacaatcctgaaaaaggagcatggactgaactcagtcctcttgatgttatg
caaatgcttggccgtgctggaaggcctcagtatgacacttatggtgaaggaatcatcata
actggacacagtgaactgaaatattatctttctttgatgaatgaacagcttcctattgaa
agtcagtttatatccaagttggctgatcaattgaatgcagagattgttcttgggacagta
cagaatgtcaaagaggcatgcaagtggctcctatatacttacctctatgttcgcatggta
cagaatcccacactttatggtctagctgcggatgccctcgaaactgattatgctttggag
ggaaggcgtgctgacttggtttattctgctgctacgttgctggacaagagtaacttggtt
aagtacgataagagaagtggatatttccagatgactgacctggggcgcattgcgagctat
tattacataactcatgggacaatttccacgtacaatgagcaattgaagcccatcacgggt
gatattgaactttgtaggcttttctctcttagtgaggaattcaaatatgtaaaagtcaga
caagatgagaaaatagaattggcaaagcttctagatcgtgtccctattccgataaaagag
agtcttgaggagcctagcgccaagatcaatgttctactgcaggcgtatatttcacggctg
aagcttgaagggttatctctgtcatccgacatggtttatatatctcagagtgctgcacgt
ctgatgcgagccctttttgagattgttctgaagagaggatgggctaagttagctgagaag
gccttgaaattgtgcaaaatgataagtaagaggatgtggagcgtacagacaccactccgc
caattccacagcatttcaaatgagatcttgatgaagttggagaagaaagatcttgcttgg
gagcgttattacgatctttcatcacaagagttgggagagcttatccggttcccgaagaag
ggtagaacgttacacaagtgtattcatcagttcccgaagctgaacctcgcagcacatgtt
cagccaattacccggtcagtcttgagggtagaattgaccattacaccggatttccagtgg
gaggacgtggtccatggttttgtagaacctttctgggtgattgttgaagacaatgatggg
gaatatattcttcatcatgaatgtttcatgctgaagaagcagtatattgatgaagaccat
actttgaacttcacagtcccaatatatgagccattgccccttcagtatttcattcgtgtt
gtctctgacaggtggctagggtctgagactgttttgccagtctctttcctacacctgact
ttgccagaaaaatatcttcctcccactgagttactagacttacaacctcttccagttact
gcattgaggcatccagcatatgaagcactttatcaagattttaagcatttcaatccggtt
cagactcaggtattcaccattttgtacaattcaaatgacaatgtcttggttgcagctcca
actggtagtgggaagaccatttgcgctgaatttgccatattgaggaatcatcagaaagga
cctgataatatcagtcgtactgtgtatatagctccactagaggctctggccaaggagcgg
ttcagtgattggaagaagaaatttggagactctctgggaattagagttgttaaattaact
ggggagactgccaaagatctgaagctgttagagaagggtcagttaattatcagcacgcct
gagaaatgggatgctttatctcgtcgctggaaacagcgaaagcatgttcagcaagtcggt
cttttcattattgatgaattgcacctgattggtggtcaaggtggcccaatcctggaggtg
attgtctctcggatgagatatatttcaagccaggttgagaacaagatccgcatcgttgct
ttgtcaacttccctagctaatgccaaggatttgggagaatggattggggctacatctcat
gggctcttcaactttccttctggtgttaggcccgtgccactggatatacacattcaaggt
gttgatattgctaactttgaagctaggatgcaagccatgacaaaacacacatatactgca
attgtccaacatgcaaggaaaggaaagcctgcaattgtgtacgttcccacgaggaagcat
gcacgcctgactgctgttgatctgatgagttattctagtatggacagagaagacacaccc
atgtttctgctacgatctgcagaagagctggagccttttgtggagaggatcaatgaacct
atgctgaaagagacactcaagtatggtgtgggctacttgcatgacggattgagcggcagt
gatcaggaaatagtgaagacgttgtttgaaactggatggattcaagtatgtgtaatggac
agtacaatgtgttggggagtaccactatctgcccatttggtggtggtgacgggaacacag
tactatgatggtagggaaaatatgcacactgattatccagttactgatttgttgaagatg
atgggtcatgcgagtcgacctcttgtagatagctgtgggaagtgtgtcatcctttgccat
gcaccacgcaaggactactacaagaagttcttgtatgatgcattcccagttgaaagccat
ctgcaacactatctccatgacaatttgattgctgaggtgattgtgggagttattcagaac
aagcaggatgcggtggattacctaacatggaccttcatgtatagaaggctgacacagaat
ccaaactactacaatctgcagggtgttagtcacaggcatctgtcggaccacctctcagag
ctggtggagaatgctatcagtgacttggaggcaagcaaatgcgttgctgttgaggatgac
tttttgctttcacctttgaaccttggcatgatagcgtcatactattatatcagttacacg
acaatagagcgatttagctcttccctgacctccaaaacgaagttgaagggcttactggaa
atattggcttcagcgtcggagtataaacggttgccgataagaccaggtgaagaggagttg
acaagaaggttgattaatcaccagcgtttctcctttaggaatccgaaatacacagatcat
cacaccaaggctaatgctcttttacaagcccatttttctaggcaagtgttgggtggaaat
cttgcttctgaccagcaacaggtgcttctttctgctattaggctgcttcaagcaatggtt
gatgttatttccagaaacaaatggcttagtctagcacttctagcaatggaggtgagccag
atggtgacacagggaacgtgggcacatgactcgatacttcttcaggttccacactttaca
aatgaattggctaagaagtgccaagaaaatccaggaaagagtatagaaacagtgtttgat
ttagtggagatggaagatgacgagaggcttgagctcttgcaaatgtcggacttacagctt
atggatgttgcccggttttgtaatcggtttccaaacattgatttgacatatgatgtgttg
aaccgtgataatgtgagtgctggagacgatgtgagtgtgcaggtaacccttgagcgagat
cttgagggtggaacagaggttggacctgtttttgcacctagatatcccacgaccaaggaa
gaaggatggtggcttgttgtcggcgatacaaagagcaaccaactgctggccattaagaga
gttaccctgcaaaggaagtccagtgtcaagctcaatttttctgcacctgcagaagctgga
acgaggacctacacactctatttcatgtgtgattcttatctgggttgtgaccaggagtat
actcttacacttgatgttaaagcggcaatgactaaagaggacagtgaaagagtctga
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integrated database retrieval system
