Nocardia tengchongensis: KHQ06_34450
Help
Entry
KHQ06_34450 CDS
T07484
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ntc
Nocardia tengchongensis
Pathway
ntc03030
DNA replication
ntc03410
Base excision repair
ntc03420
Nucleotide excision repair
ntc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ntc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KHQ06_34450 (ligA)
03410 Base excision repair
KHQ06_34450 (ligA)
03420 Nucleotide excision repair
KHQ06_34450 (ligA)
03430 Mismatch repair
KHQ06_34450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ntc03032
]
KHQ06_34450 (ligA)
03400 DNA repair and recombination proteins [BR:
ntc03400
]
KHQ06_34450 (ligA)
Enzymes [BR:
ntc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KHQ06_34450 (ligA)
DNA replication proteins [BR:
ntc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KHQ06_34450 (ligA)
DNA repair and recombination proteins [BR:
ntc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KHQ06_34450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KHQ06_34450 (ligA)
MMR (mismatch excision repair)
DNA ligase
KHQ06_34450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KHQ06_34450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
QVI25324
UniProt:
A0ABX8CZK4
LinkDB
All DBs
Position
7244189..7246246
Genome browser
AA seq
685 aa
AA seq
DB search
MTAASGDERVEWQRLAEEVRDHQFRYYVRDAPIITDGEFDELFNRLVALEETHPDLRTPD
SPTQLVGGGFTTAFAPVDHLERMYSLDNVFNEDEMRQWIAKVEADAGSGLYYVCEVKIDG
VALNLVYEDGKLVRGATRGDGRTGEDVTLNARTIEDIPHELTHSDEFPVPKLLEVRGEAF
MTLADFEALNASIVAEGKAPYANPRNTAAGSLRQKDPAVTARRRLRMICHGFGRLEGFAP
ESQHEAYRALAAWGLPVSAHTVRVQGADAVIDRVNYWGEHRHDIEHEIDGQVVKVDEFSL
QRRLGATSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTPFAVMQPVTVAGSTVAMA
TLHNASEVQRKGVLIGDTVTIRKAGDVIPEVLGPVVDARDGSERAFVMPTHCPECGTELA
PAKEGDADIRCPNQQYCPAQLRERVFHVAGRGAFDIEALGYEAAIDLLKSGAIADEGDLF
SLDEDTLLTTTLFTNKSGTLSQNGKRLLENLESAKDRPLWRVLVGLSIRHAGPTAARALA
TAFGSMDRIREASAEELAATDGVGPTIAAAVTEWFTVPWHLDIVDKWAAAGVRMEDERDE
SIERNLEGLSIVVTGSLEGFTRDGAKEAILIRGGKAAGSVSKKTAFVVIGDAPGSKAAKA
EELGVPILDEAGFVKLLEGGPEAVA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atcaccgcggcgagcggggacgagcgggtcgagtggcagcggctggcggaggaggtccgc
gaccaccagttccgctactacgtgcgggacgcgccgatcatcaccgacggcgagttcgac
gagctgttcaaccgcctggtggcgctcgaggagacgcatccggatctacggaccccggat
tcgccgacccagctcgtcggcggcggcttcaccaccgcgttcgcgcccgtggatcatctg
gagcggatgtactcgctggacaacgtgttcaacgaggacgagatgcgccagtggatcgcc
aaggtggaggccgacgccggctccgggctgtactacgtgtgcgaggtgaagatcgacggt
gtcgccctcaacctggtgtacgaggacggcaagctggtgcgcggcgccacccgcggcgac
ggccgcaccggtgaggacgtcaccctcaatgcccgcaccatcgaggacatcccgcacgag
ctgacccacagcgacgagttcccggtcccgaagctgctcgaagtgcgcggcgaggcgttc
atgacgctggccgacttcgaggcgctcaacgcctcgatcgtcgcggaaggcaaggcgccg
tacgcgaatccgcgcaataccgcggccggttcgctgcggcagaaggatccggcggtgacg
gcgcggcggcggctgcggatgatctgccacggcttcggccgcctggagggtttcgcgccg
gagtcgcagcacgaggcgtaccgcgcgctggccgcgtgggggctgccggtgtcggcgcac
acggtgcgggtgcagggcgcggacgcggtgatcgaccgcgtcaactactggggcgaacac
cgccacgacatcgagcacgagatcgacggccaggtcgtcaaggtcgacgagttcagcctg
cagcgccgcctgggcgcgacctcgcgcgcgccgcgctgggccatcgcctacaagtatccg
ccggaggaagccaccaccaagctgctcgatattcaggtgaatgtcggtcgcacgggccgg
gttacgccgttcgcggtgatgcagccggtgacggtcgcgggttccacggtcgccatggcc
accctgcacaatgcctccgaggtgcagcgcaagggcgtgctgatcggcgacaccgtcacc
atccgcaaggccggtgacgtgattcccgaggtgctgggcccggtggtggacgcgcgcgac
ggttccgagcgcgccttcgtgatgccgacgcactgccccgagtgcggcaccgagctggct
ccggccaaggagggcgacgccgatatccgctgccccaatcagcagtactgcccggcgcag
ttgcgggagcgggtgttccacgtggccgggcgcggcgcgttcgatatcgaggcgctgggc
tacgaggccgccatcgacctgctgaagtcgggcgcgatcgccgacgagggcgacctgttc
tcgctcgacgaggacacactgctcaccaccacgctgttcaccaacaagagcggcaccttg
tcgcagaacggcaaacggctgctggagaacctggagtcggccaaggaccgcccgctgtgg
cgtgtcctggtcggcctgtccatccggcacgcgggtccgaccgcggcccgcgccctggcc
accgctttcggcagcatggaccggattcgcgaggcctcggccgaggaactggccgccacc
gacggcgtcggcccgaccatcgccgccgcggtcaccgaatggttcaccgtgccttggcat
ctcgacatcgtcgacaagtgggccgcggccggtgtccgcatggaggacgagcgtgacgag
tccatcgaacgcaacctcgagggcctgtccatcgtggtcaccggttcgctggagggcttc
acccgcgacggcgcgaaggaagccatcctcatccgcggcggcaaggccgccggatcggtc
tccaagaaaacggctttcgtggtgatcggcgacgccccgggctccaaggccgccaaggcc
gaggaactgggtgtaccgatcctcgacgaggcgggcttcgtcaagctgctcgaaggcggc
cccgaggcagtcgcctga
DBGET
integrated database retrieval system
