Caenibius tardaugens: EGO55_00145
Help
Entry
EGO55_00145 CDS
T05741
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ntd
Caenibius tardaugens
Pathway
ntd03030
DNA replication
ntd03410
Base excision repair
ntd03420
Nucleotide excision repair
ntd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ntd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EGO55_00145 (ligA)
03410 Base excision repair
EGO55_00145 (ligA)
03420 Nucleotide excision repair
EGO55_00145 (ligA)
03430 Mismatch repair
EGO55_00145 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ntd03032
]
EGO55_00145 (ligA)
03400 DNA repair and recombination proteins [BR:
ntd03400
]
EGO55_00145 (ligA)
Enzymes [BR:
ntd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EGO55_00145 (ligA)
DNA replication proteins [BR:
ntd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EGO55_00145 (ligA)
DNA repair and recombination proteins [BR:
ntd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EGO55_00145 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EGO55_00145 (ligA)
MMR (mismatch excision repair)
DNA ligase
EGO55_00145 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EGO55_00145 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AZI34543
UniProt:
U2YIS9
LinkDB
All DBs
Position
complement(27609..29669)
Genome browser
AA seq
686 aa
AA seq
DB search
MPVDITEADAANELMRLARQIALHNRLYHAEDSPEISDAEYDALVRRNTELETAFPHLIR
PDSPSRQVGHEIAASPLSKVAHEVRMMSLDNAFTDEEVADFVGRVRRFLNLAPDEVVAMT
AEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTANVAHIGDIPQQLQGDAPAVFEVRG
EVYMSKADFHALNAAQTAAGGKVFANPRNAAAGSLRQKDAWVTAKRPLRFWAHGWGAASH
VQGTTQQDVMARIAAWGLPISPELVRCDTLEAMLAAYARIATGRGDLPYEIDGVVYKVDR
LDWQQRLGFVAKAPRWAIARKFPAERAETVVEAIDIQVGRTGKLTPVGRLAPVLVGGVTV
TNVTLHNRDEIARLGVRVGDRVVIQRAGDVIPQVVDNLTRDVVRDPFPFPDHCPECGSEA
VAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGLGEKTIDQFFALGWLESPVDIF
RLRKRRDAILALDGWQDKSVDNLLKAIENRRQPDAARLLFGLGIRHVGTVTARDLMKNFH
TLPALRDAAEQAQAGDGEAAGLLTSIEGVGPAVVEALGDFFHEDHNREVWDDLLSEVAPP
PYIVETRDSAVAGKTVVFTGKLETMSRDEAKAQAEALGAKAAGSVSPKTDLVVAGPGAGS
KLKKAADLGIAVIDEAAWAEIVRAAG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgatatcaccgaagccgatgccgccaacgaactgatgcgcctcgcgcggcag
attgccctgcataaccggctgtatcacgcggaagattcgcccgagatttcggatgcggaa
tatgatgcgctggtgcgccgcaataccgagctggaaaccgcgtttccccatttgatcagg
cccgacagcccctcccgccaagtggggcacgagattgccgcatcacccttgtccaaggtc
gcgcacgaggtgcgcatgatgagcctcgacaatgcctttacggatgaggaagtggccgac
ttcgtcggtcgtgtccgccggttcctcaaccttgcaccggatgaggtggtggcgatgacg
gcggaagacaagatcgacgggctgtcctgctcgctccggtacgaaaacggcaaactcgtg
cgtgcggccacgcgtggcgatgggcaggtgggggaagatgtcaccgccaatgtcgcgcat
attggcgatattccgcagcagttgcagggcgatgcgccagccgtgtttgaagtgcgcggc
gaagtctacatgtccaaggccgactttcacgcactaaacgcggcgcaaacggccgcaggt
ggcaaggttttcgccaatccgcgcaatgccgccgccggatcgctgcgccagaaagatgcc
tgggtcacggcaaagcggcccttgcggttctgggcgcatggttggggcgcggcaagccac
gttcagggcacgacccagcaggacgtgatggcacggatcgccgcatggggattaccgatt
tcgccggaactggtccgctgcgatacgctggaggcgatgctggcggcctatgcccgcatt
gcgacggggcggggcgatctgccttatgagatcgacggggtcgtctacaaggtcgaccgg
ctcgattggcagcaacggctggggttcgtcgccaaggccccgcgttgggcgattgcgcgc
aaatttccggcggaacgggcagaaaccgtggttgaggctatcgacatccaggttggccgc
accggcaagctgaccccggttgggcgattggctccggtgctggttggcggcgtaaccgtc
accaacgtgaccttgcataatcgcgacgagatcgcgcgtctgggtgtgcgcgtaggcgat
cgcgtggtgatccagcgcgcaggcgatgtgatcccgcaagtggtcgacaatcttacgcgc
gatgtcgtgcgtgatccgttcccgttccctgatcattgccctgaatgcggcagcgaggcg
gtggctgaggaaggcgaggtcgacgtgcgctgcaccggggggctcatctgcccggcacaa
cggacggagcggctcaagcatttcgtcagcaggggcgcgctcgatatcgatgggctgggc
gagaagacgatcgatcagttctttgcattgggctggctcgaaagcccggtggatatcttc
cgtctgcgcaaacggcgcgatgccattcttgcgctggatggctggcaggacaagtctgtg
gacaacctgttgaaagcgatcgagaaccggcgacagccggatgccgcgcggctgctgttc
gggttgggcatccgccatgtcggtacggtcaccgcgcgcgatctgatgaagaatttccat
accttgcctgcgttgcgcgatgctgcggaacaggcgcaggcgggagacggcgaggccgcc
ggtctgctgacatccatagaaggggttggcccggccgtagtggaggcgctgggcgacttc
ttccacgaagaccataaccgggaggtgtgggacgatcttctttcggaagtcgcgccgcca
ccctacatcgtggaaacccgagacagcgcggtggcgggcaagaccgttgtatttaccggc
aagctcgaaaccatgagccgcgatgaagccaaggcccaggccgaggcgctgggggcgaag
gctgccggttccgtttcgccgaaaaccgatcttgtggtcgccggtccgggggcagggtcc
aagctcaagaaagcggcagatctcggcattgcagtgatcgacgaggcggcctgggcggaa
atcgtccgggctgcgggataa
DBGET
integrated database retrieval system
