Niallia tiangongensis: AB3U99_02940
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Entry
AB3U99_02940 CDS
T10881
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ntgc Niallia tiangongensis
Pathway
ntgc03030
DNA replication
ntgc03410
Base excision repair
ntgc03420
Nucleotide excision repair
ntgc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ntgc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB3U99_02940 (ligA)
03410 Base excision repair
AB3U99_02940 (ligA)
03420 Nucleotide excision repair
AB3U99_02940 (ligA)
03430 Mismatch repair
AB3U99_02940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ntgc03032
]
AB3U99_02940 (ligA)
03400 DNA repair and recombination proteins [BR:
ntgc03400
]
AB3U99_02940 (ligA)
Enzymes [BR:
ntgc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB3U99_02940 (ligA)
DNA replication proteins [BR:
ntgc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB3U99_02940 (ligA)
DNA repair and recombination proteins [BR:
ntgc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB3U99_02940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB3U99_02940 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB3U99_02940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB3U99_02940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_pol_A_CTD
Nlig-Ia
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
XKB97791
LinkDB
All DBs
Position
586947..588971
Genome browser
AA seq
674 aa
AA seq
DB search
MEQNLAEKRVKELHNLLNQYGYEYYVLDNPSVPDAEYDALLNELIRLEEQFPSLKTNDSP
SQRIGGEILDMFSKVQHQKPMLSLGNAFNEADLRDFDRKVRAAIGEDFSYVCELKIDGLA
VSLRYENGLFEQGATRGDGTTGEDITANLKTIRSIPLRLNQPVSLEVRGEAFMPKKSFEA
LNKIKDENGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYAIGDVGQTGVQSHSEGLN
LLDTLGFKTNKERKKCATIEDVLQYIEGWQEKRPHLPYEIDGIVIKVDGLAQQEQLGTTA
KSPRWAIAYKFPAEEVMTKLLNIELNVGRTGVVTPTAVLEPVKVAGTTVKRASLHNEDLI
REKDIRLGDMVVVKKAGDIIPEVVNVLVEKRTGEEEEFLMPTHCPECNSELVRLEEEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGERVVSQLFSEKLIEDVADLYALEYEQLIQL
ERMGEKSVNNLLQAIEVSKQNSLERLLFGLGIRHVGAKAAKTIAMEFKQMDQLMEATKED
LTAINEIGEKMADSIVTFFEQEEVLELITELKTYGVNMEYTGPLPVATEEADSAFAGKTI
VLTGKLEQLSRNEAKDQIELLGGKITGSVSKKTDLVIAGEDAGSKLTKAEQLGIEVWDEE
RLLEELKNKGVFNQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaaaccttgcagagaagcgagtaaaagaactgcataatttattaaatcaatat
gggtatgaatattatgttctggataatccttctgttcctgatgcggaatatgacgcatta
ttaaatgaattaatccgtttggaagaacaatttccaagcttaaaaacaaatgattctcca
tcacagcgaattggtggagaaatattggatatgttctcgaaggttcagcatcaaaagccg
atgctgagcttagggaatgcatttaatgaggcggatttacgcgattttgatcggaaggtt
cgtgcggctattggggaagatttttcatatgtctgtgaattaaagatagatgggcttgct
gtttcccttcgatatgagaatggcttatttgagcaaggagcaacgcgaggagacggaaca
actggagaagatattacagcgaatctaaaaacgattcgttccattccgctccgtttaaat
caaccggtcagtctagaggttcgtggcgaagcgtttatgccgaaaaaatcttttgaggca
cttaataaaataaaggacgaaaatggagaagaaccatttgccaatcctagaaatgctgcg
gctggttctttacgccaattagatccacgaattgctgcatcacgaaacttggatatcttc
ctttatgctattggggatgttggtcagactggtgttcaatcccatagtgaaggactgaat
ttactagatacacttggattcaaaacaaacaaagaaagaaaaaaatgtgccacaattgag
gacgttttacagtacattgaaggctggcaggagaaacgcccacacttgccatatgaaata
gatggaattgtgataaaagtagacggtttagctcagcaagagcagcttggaacaactgca
aagagtccaagatgggcgatagcgtacaaatttcccgcagaagaagtaatgacaaagctc
cttaatattgaactaaatgtcggtagaacaggtgttgtgacgccaactgctgtattagaa
ccagtaaaggttgccgggacaacggtgaaaagagcatctttacataatgaggacttaata
cgggagaaagatattagactcggtgacatggttgttgtcaaaaaagctggcgatattatt
ccagaagtagtgaatgttctagtggaaaaaagaacgggggaagaagaagaatttctgatg
cccactcattgtccagaatgtaatagtgaacttgttcgattagaggaagaagtagcattg
cgctgtattaatccaaaatgtccggcgcaaattagggaaggcttaattcattttgtttct
agaaatgctatgaatattgacgggcttggtgagcgagtagtgagccaattattttctgaa
aaattaattgaagatgttgctgatttatacgcattagaatatgagcaactcattcaatta
gaaagaatgggcgaaaagtctgttaataatttattgcaagcaatagaggtatcaaagcaa
aactcccttgaaaggctgttatttggcttaggaattagacatgtaggtgcaaaagcagca
aaaacaattgcgatggaatttaaacagatggatcagctcatggaagctacgaaagaggat
ttaacagctattaatgaaattggcgaaaagatggccgattccattgtcacttttttcgaa
caggaagaagtgttggaattaattacggagttaaaaacatacggcgtcaacatggaatat
accggaccattaccagtagcaacagaagaggctgattccgcatttgctggcaaaacaatt
gtattaacaggaaagttagaacagctttctcgtaacgaagcaaaagaccaaatcgaattg
ctaggtggtaaaataaccggaagtgtcagcaagaaaacggatttagtcattgcgggagaa
gatgcgggaagcaaactaacaaaggcagaacagttaggcattgaagtgtgggatgaggaa
agacttttggaagaattgaagaacaaaggtgtgtttaatcaatga
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