Natranaerobius thermophilus: Nther_0462
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Entry
Nther_0462 CDS
T00761
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nth
Natranaerobius thermophilus
Pathway
nth03030
DNA replication
nth03410
Base excision repair
nth03420
Nucleotide excision repair
nth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nther_0462
03410 Base excision repair
Nther_0462
03420 Nucleotide excision repair
Nther_0462
03430 Mismatch repair
Nther_0462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nth03032
]
Nther_0462
03400 DNA repair and recombination proteins [BR:
nth03400
]
Nther_0462
Enzymes [BR:
nth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Nther_0462
DNA replication proteins [BR:
nth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Nther_0462
DNA repair and recombination proteins [BR:
nth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Nther_0462
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nther_0462
MMR (mismatch excision repair)
DNA ligase
Nther_0462
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nther_0462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
UPF0758_N
zf_CopZ
Motif
Other DBs
NCBI-ProteinID:
ACB84058
UniProt:
B2A5W5
LinkDB
All DBs
Position
488294..490285
Genome browser
AA seq
663 aa
AA seq
DB search
MSKDIQKKVEALREKIEYHNHRYYVLDAPEISDQEFDALMNELIELEQTYPEYQSPDSPS
QRVGGEPLDKFPRVSHEIPMLSLENAESQKGLLDFHQRVSKNTQKTDPVYVAELKIDGLA
LSLRYEQGILVRGATRGDGTTGEDITPNVKTVRSIPLKLSKPLDIEIRGEAFMSKASFER
LNQEKAERGEDPFANPRNAAAGSLRQLDPKIPAKRDLDFFPYSVPYIRGENLDSHYSAVK
ELKDLGFKINPYIRKFETMEEVISYCEEWQEKRTKLPYEIDGVVIKLNDYNLQQQLGATS
KNPRWAIAYKFPAEQAESQVNNIFINVGRTGALTPVVELEPVRIAGSTVKRASLHNEDIL
RQKDVRIGDRVIIQKAGDIIPEVVKVKEEARTGHEQPFVYPESCPVCKSEAKRINDEAIL
RCINPGCPAQAKERIIHFSSRDAMDIEGLGEKVVEKLYSHGLIKDVADIYYLAKNELSNL
EGFGDKSAENLLQAIEESKKNPFNKLLYGLGIRLVGKRAAQLLAFEFEHLDNLMKAQIED
LTKINDIGPRMATSIVSFFQLEHTHNLIRKLKKAGVNMKEPTEQNKSSDPSLTGKLVVIT
GTFDNYTRRELTDLIEAKGAKVTSNVSSNTDFVLVGANPGSKRDKAQDLGLTIIEESDLE
DFL
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaagatattcaaaagaaagttgaagctctgagagaaaaaattgaatatcacaat
catcgttattacgttttggacgcccctgagatatctgatcaagaatttgatgctttaatg
aatgaattaatagagcttgagcaaacttatccggaatatcaaagccctgattctccttca
caaagagtaggtggagaacccttggataaattccctcgggtaagtcacgaaatacccatg
ttgagcttggaaaatgccgagagccaaaaaggattactagatttccaccaaagagttagc
aaaaatacccaaaaaacagacccggtatatgtggcagaattaaaaattgatggtttggct
ctttcgttaagatatgaacaggggattttagtaagaggagcaaccaggggcgatgggaca
actggcgaagatattactcctaatgtcaaaacagtgagatccatacctttaaagttatct
aaacccctagatattgaaatcaggggtgaggcttttatgtctaaagcttcttttgagcgt
ttgaatcaggaaaaggcagaacgaggcgaagatccatttgccaatccccgaaatgctgca
gccggttctttaagacaactagatcctaaaataccggccaaaagagacttagactttttc
ccctacagtgttccatatataaggggtgaaaatttagatagtcattattctgcggtaaaa
gaattgaaggatctcggttttaaaataaatccttacatcaggaaatttgaaaccatggaa
gaagttatctcttattgtgaagaatggcaggaaaagcggacaaaacttccctatgaaatt
gatggagttgttattaaattaaacgattataacttacaacaacaattgggtgccacttct
aaaaaccccagatgggccatagcttataaatttcctgctgaacaagctgagagtcaagtg
aataatatttttattaatgtaggtagaactggagccttaacccctgtagtggaacttgaa
cctgtaaggattgcgggttctacagtcaaacgagctagcttgcataatgaagatatcctc
agacaaaaagatgtcaggataggtgatcgggtcatcattcaaaaagccggagatataatt
ccagaagtggtaaaagttaaagaggaagcgcgaactggtcacgaacaaccatttgtctat
cctgagtcttgtccagtttgcaaaagtgaagccaaaagaatcaatgatgaagctatactt
aggtgcataaatcctggctgtcctgcccaagcaaaagaaagaataatacatttttcatct
agagatgctatggatattgaaggattaggagaaaaagttgtagaaaaattatattctcac
ggtttaataaaggacgtggcggatatttactatttggctaaaaatgaattatcgaacttg
gaaggtttcggggacaagtctgcagaaaacttgttgcaagctatagaggaaagtaaaaaa
aatccatttaacaagttattatacggcctggggataaggttagtaggtaaaagagcagcc
caattactggcatttgaatttgagcatctggacaatttgatgaaagcacaaatagaggat
ctgactaaaataaatgatattggacctaggatggctaccagtatagtaagcttttttcaa
ttagaacatactcacaatttaatcagaaaacttaaaaaagctggagtcaatatgaaagaa
cccacggaacaaaacaagagtagtgatccatctctaactggtaagttagtagtgattacg
gggacttttgataattacaccagaagggaattgactgatttgattgaagcaaaaggtgct
aaagtgaccagtaatgtcagtagtaatacagattttgtattagtgggagcaaaccccggt
tcaaagcgtgacaaagcgcaagacctgggattaacaattatagaagaaagtgatttagaa
gattttttgtaa
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