Nicotiana tomentosiformis: 104099464
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Entry
104099464 CDS
T05025
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
104099464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nto03019
]
104099464
Messenger RNA biogenesis [BR:
nto03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104099464
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
104099464
NCBI-ProteinID:
XP_070031158
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All DBs
Position
5:complement(87134936..87174530)
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AA seq
982 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDVVEEEPKEDSHGLFVPVDVSKPNPNGMEFDNMYLDMNGII
HPCFHPEGKAAPATYNDVFKSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEKRLREEFEMEAASLLPTGKPETSDSNVITPGTPFMAVLAVALQYYIH
SRLNKNAGWRFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITPPGQQEKCFACGQVGHLAADCRGTNGNQGENGKGVNETPFHKK
KYQFLNIWVLREYLQYDLEIYNPPFRIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGA
VNLLMFIYRREFTTMGGYLTDAGEVFLDRVEHFIQAAAVYEDQIFQKRARIKQSIENNER
ARNEVNAQPQPPAEDKVKLGEPGYKERYYSEKFGVSTAEGIDEVRQDVVQKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKGLADLEITFFPGEPFKPFDQLMGVLPAASANALP
EKYRMLMMDPSSPISDFYPTDFELDMNGKRFAWQAVVKLPFIDEKKLLAETKKLEDTLSE
EEQLRNSVMFDLLYVHHHHTFAPYIMSYYHHNDKVPPGKQRPWLIDANLSGGMNGFIWLS
ERNGQRDRVCSPLNGLEDISNNKILNITFLNPVPHKHIPKPPEGVFMPKKILRAVDIKPF
PVLWHEDHGTRRQLGKDRGPVPGAIAGPSLGEAAHRLLKNTLNIKPGGTNSGVLEQSYPR
NFPGNHVLNRPRPAGPSGYEGGFYDQMSYRNFSPNHRPRFPGPVGRANGFFEDPSYLSSN
FMHRGASGNPRYALSPYELQSPRQNFRMQDRHSYQDQYHSMRNEMSVLTIESGSRTRPYS
AVPRMPNSGQLSNVRPLPFTQSVGPLPSPPPQWINKPARGTTSMHLKHQETLKGPGCEKQ
VKQVYQIKSRPTQSPQETGTQH
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcattttataggtggttggctgatcgatacccgctatcgattgtggac
gtggtagaggaagagcctaaagaggacagtcatgggctgtttgttccagtggatgtttca
aagccaaaccctaatggcatggaatttgataacatgtacttggacatgaatggtatcatt
cacccttgttttcatcccgagggaaaggctgcaccagcaacttacaatgacgtattcaaa
tcaatttttgactacattgaccatcttttctcattagtccgtccaagaaaactcctctat
atggctattgatggagtggctcctagagctaagatgaaccagcagcgaaccaggcgtttt
agagccgctaaagatgccgctgaagctgaagctgaagaaaaaaggttgagggaagagttt
gagatggaggctgctagtttattgcctacaggaaagcctgagacatctgattcaaatgtt
attactcctggtactccatttatggcagtactagcagtagctcttcagtattatatacac
tcgaggttgaataaaaatgcaggctggcggtttaccaaggttatcctttctgatgctaat
gttcctggtgagggtgagcacaaaattatgtcctacatccgcttgcaacgtaaccttcct
ggcttcgacccaaatacccgtcattgtctttatggcctagatgcagatctgattatgctg
tctcttgctactcatgaagtccatttttcaatattgagggaggtgattacaccaccaggt
cagcaggagaagtgttttgcctgtggtcaggttggacatcttgcagctgattgtcgcggt
acaaacggaaaccaaggcgaaaatggaaagggtgtgaatgaaacaccttttcacaagaag
aaatatcagtttctcaacatctgggtgttgcgagagtatctgcaatatgatttggagatt
tacaaccctccatttcggatagactttgaaagggtggtggatgattttgtttttttgtgt
ttttttgttgggaacgattttcttccccatatgccaacactggaaattcgagagggtgcc
gtcaatctgctgatgttcatttatagaagagagtttacaacaatgggtggttatcttaca
gatgcgggtgaggtgtttttggatagagtagaacattttattcaggcggcagcagtttat
gaagaccaaatctttcaaaagagagctaggataaagcagtcaatagaaaataatgaaaga
gcaagaaatgaggttaatgctcagccacagcctccggcggaggacaaggtgaagttaggg
gagcctggatacaaggaaaggtactattccgagaaatttggtgtatcaactgcagagggt
attgatgaagtcagacaagatgtagttcagaagtatgtggaaggattgtgttgggtttgc
cggtattactaccaaggtgtttgctcgtggcaatggttttacccatatcattatgctcca
tttgcttctgacctcaaaggtctggcggacttggaaattacttttttcccaggggaacca
tttaagccctttgatcagctaatgggtgttctgccagctgcaagtgcaaatgctcttcct
gaaaagtacaggatgctaatgatggatccatcatcaccaatttctgatttttacccaaca
gattttgaacttgacatgaatggaaagcgttttgcatggcaggcagttgtaaaattgccg
ttcatcgacgagaagaagttacttgctgaaactaagaagcttgaagacacattatcggaa
gaggagcaactcaggaacagtgtaatgttcgatttgctctatgttcatcatcaccatact
tttgctccatatatcatgtcgtactatcatcacaatgataaggtgcccccagggaaacaa
aggccatggctaattgatgcaaatctgagtggtggaatgaatggattcatttggttatct
gagaggaatggccagagagatagggtttgttccccactcaatggattggaagatatttca
aataataagattttaaatattacctttctgaatccagtacctcataagcatattccgaag
cctccagaaggagtatttatgcccaaaaagattttgagagctgttgatataaaacctttc
cctgtattatggcatgaagatcatggtacccggcgtcagctaggcaaagataggggtcca
gtacctggggcaatagcagggccttccctgggagaagcagcacatcggttgcttaagaac
acattgaatatcaaacccggtggaacaaattctggagtattggagcaatcatatcctcga
aatttccccggcaaccatgttctgaataggccaaggccagctggaccgtctggctatgaa
ggtggattttatgatcaaatgagttataggaatttttctcccaatcaccggccacgattt
ccaggaccagttggccgcgcaaatggtttttttgaggatccttcttatttatctagcaat
tttatgcatcgtggtgcatctggaaatcccagatatgctctatccccttatgagttgcaa
agtcctaggcaaaatttcaggatgcaagacaggcattcatatcaagatcagtatcatagc
atgaggaatgaaatgtctgtgttgacaattgaaagtggttcaagaacgaggccttattca
gctgtgccaaggatgccaaattcaggacaactttctaacgtccgcccactgccattcaca
caaagtgtgggtccacttccttcacccccgccgcagtggattaataaacctgcaagggga
actacatcaatgcacttaaagcatcaagaaactttaaaagggccggggtgcgagaagcaa
gtcaagcaggtttaccaaatcaaaagccggccaactcagagtccccaagaaacaggaaca
caacattga
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