Nicotiana tomentosiformis: 104106827
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Entry
104106827 CDS
T05025
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
nto
Nicotiana tomentosiformis
Pathway
nto03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104106827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104106827
Enzymes [BR:
nto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104106827
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104106827
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
104106827
NCBI-ProteinID:
XP_009613755
LinkDB
All DBs
Position
11:complement(39287920..39327579)
Genome browser
AA seq
1170 aa
AA seq
DB search
MATSAVDGGGSSIGGEDIKFSVMVSLFQWIQKSKSSAQKRSKFRKFLDAFCRKPQDNFAA
MRLILPGLDRERGSYGLKEHVLATCLIDALAMSRDSDDARRLLNWRKGGPKTGSNAGNFS
LVAAEVLQRRQGMASAGLTIKELNEFLDHLASSENRAEKTSILSDLIRKTNAQEMKWIIM
IILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKAVRP
QLALRVSNASAAWKKLHGKEVVVECKFDGDRIQIHKNNSDLNFFSRNFLDHQEYAHGMLD
VITQNILVDKCILDGEMLVWDASMNRFAEFGSNQEIAKAAREGLDSDRQLCYIAFDILYV
GDTSVIHRSLKERQEILQEVVKPIKGRLEILVPNGGLNAHRPSAGEPCWSIIAHSVDDVD
KFFKETVENRDEGIVLKDLTSKWEPSDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRH
GGEVAQFLVGLAERPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAP
PAFYQVTNNAKERPDVWVESPEKSIIVSITSDIRTIRTEVFAAPYSLRFPRIDRVRYDKP
WHECLDVQSFVDLVHSSNGTTQREADYGIGQDHEPKATIRSSRKRGKKNVSAVPSHFVQT
DVSHIKGETSMFSSMVFYFANVPSSHTLDSMHKMVVEHGGSFSMNLNNAVTHCIAAENRG
IKFQAAKLHGDVIHCSWLFDCCLQKRLLPLQPKYFLFLSDSTKRKLEAEVDEYSDSFYSD
LSVKDIRKLLSDIEHSEYSKTVEYYKKKYCPKDKWARFHGCCIYFFIPEQCLKYSDCKAL
VELATRRMKVEISVGGGKVGGNLCHATHVVVMSLPDFDVNFNEVLNSFSEAEKHVLYNTK
LHVVRARWLEDSFKEDQKLHEDSYSLKPSNFQMSISEKRHDKLRGKTVKCKRASSPDNHG
VQIKAEGISDQCQAITLPKGDRKRNRLRPTGTATAKAKPAINMPRRVRRKATNRRAKIHE
NESDESATSGEHLHNGESDGAAGTRGSHENVAEHGSGIQNKDVADDLELSPHGETFLQGT
SECSRSRERLDEAHETSYGSGNIASGKLEDPVDPVQAMLLHMIPHLDSKPSQSVDSLVKD
DKPEADANPSPKKKKKVSYKDVAGELLKDW
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccgtagatggtggtggtagtagtattggcggagaagacataaagttc
agcgtaatggttagcctattccagtggatacagaagagcaaatcatcagcgcagaagcgg
tccaagttccggaagtttctagacgccttctgcaggaagcctcaggacaatttcgctgct
atgcggctcattcttcctggtctcgaccgagagcgtggctcttatggactcaaagagcac
gtgcttgccacgtgcctcattgatgcccttgccatgtcccgtgactccgatgatgcccgg
cgtctcctcaactggcgtaaaggcggccccaaaactggctccaatgccggaaacttctct
cttgtcgccgccgaggtcctccagcgcagacagggaatggcctctgctgggctaacaatt
aaggaactaaatgaattccttgatcacttggcgtccagtgaaaacagagcagagaagact
tcaattctgtctgatctcatcaggaaaacaaatgcgcaagaaatgaaatggattataatg
ataattctgaaagatcttaagttgggaattagtgaaaagagcatcttccatgaattccat
cctgatgcagaggacttattcaatgtcacatgcgatttaaaactagtttgtgaaaagtta
agggacagaagtcaacggcataaacgccaggacattgaagttggaaaagcggtccgccct
cagctggctcttagggtcagtaatgcatctgctgcgtggaaaaagcttcatgggaaggaa
gtagttgttgagtgcaaatttgacggggatcgtatccagattcataaaaataattctgac
ctaaacttcttctcaagaaactttcttgatcatcaagagtatgctcatggaatgttagat
gttattacacagaatattcttgttgacaagtgcatacttgatggtgagatgctggtttgg
gatgcatcaatgaaccgctttgcagagtttggttccaatcaagaaatagcaaaggctgca
agagagggtcttgatagtgataggcagttgtgctacattgcattcgacattctttatgtt
ggggataccagtgttattcaccgaagcttgaaggaacgtcaggagattctccaggaagtt
gtgaagcccataaaaggccgtttagaaattttagtccctaatggcggtcttaatgctcat
cgtccttctgcaggggagccatgttggtcgatcattgctcatagtgttgacgatgttgat
aaattctttaaagaaactgttgagaacagagatgaaggaattgttttgaaagacctaact
tcaaaatgggaacccagtgatcggagtggaaaatggctaaagttgaagcctgaatatgtt
cgagctggctctgatttggatgttcttattattggaggctactatggttctgggcgccat
ggaggagaggtagctcaatttctggttggccttgcagagcgtccggctccaaatacatat
cccagaaggttcatttctttttgcagagtgggcactggagtttctgatgaggaacgtaat
accatagtaactcgattaaagccctatttcaggaagtatgagtacccgaagcaggcacca
ccagcgttttatcaagtaacaaataatgcaaaagagcgaccagacgtgtgggttgaaagt
ccagagaaatccatcattgtttcgattacaagtgacattagaacaataagaactgaggta
tttgctgctccatacagcttgagatttccacgtattgatcgagtgagatatgacaagcct
tggcatgagtgtcttgatgtgcaatcatttgttgacctggtacattcgagcaatggtacc
acacagagggaggcagattatggaattgggcaggatcatgaaccaaaggccaccattagg
tcgtcaagaaaacgagggaaaaagaatgtttctgcagttccttctcattttgttcagact
gacgtgtctcacatcaagggtgaaacctcaatgttctctagcatggtgttctattttgct
aatgtgccttcatcgcatacactcgattccatgcacaaaatggtggtcgagcatgggggt
tctttctccatgaatttgaataacgcagttactcattgtatagcagctgaaaatagaggt
atcaagtttcaagctgcaaaacttcatggagatgttattcactgctcttggctctttgat
tgctgtctgcaaaagaggctccttcctttacagccaaagtattttcttttcctttctgat
tcaacaaagagaaagttggaagcagaagtggatgaatattctgattctttctactctgac
ctcagcgtcaaagacattagaaagcttttgagcgacatagaacactccgaatactccaaa
actgttgagtactacaagaaaaagtactgtcccaaggataaatgggctcgatttcatggt
tgctgcatttactttttcattccagagcagtgtttgaaatattcagattgcaaggcttta
gtggaactcgctacgagaaggatgaaagttgaaatttctgtgggtggtgggaaagttggt
ggcaatctttgtcatgctacccatgtggtggtcatgtctctaccagactttgatgtaaat
ttcaatgaagttttaaatagtttctcagaggcagagaagcatgttttgtacaatacaaag
ctgcacgttgtcagggcaaggtggttggaggattcctttaaagaggaccagaagttgcac
gaggatagttacagcctaaagcctagcaattttcaaatgtcaatctcagagaagagacat
gataagctaagaggaaaaaccgtaaagtgcaaaagagcatcttcccctgataatcacgga
gtacaaatcaaagcagaaggaatttcagaccagtgccaagccatcacgctacctaagggg
gatagaaagagaaatagattaagacctactggtactgctacagcaaaagcaaaaccagca
atcaacatgccacggagagttagacgcaaggccacaaatagacgtgctaagattcatgaa
aatgaatccgatgaaagtgccacttcaggtgaacaccttcataatggtgagagtgacggg
gctgctgggactcgtggaagccatgaaaatgttgcagagcatggctcaggaattcagaat
aaggatgttgcagatgatttggaattgtcaccacatggtgaaacatttctacaaggcact
tctgaatgcagtaggagccgtgaaagattggacgaagctcacgaaacttcatacggaagt
ggaaatattgccagtggtaagctggaagaccctgttgatccagtccaagctatgttattg
catatgataccccacctggatagtaagccaagccagagtgtggacagtcttgtaaaagac
gacaaaccagaggcagatgctaatcctagtcctaaaaagaaaaagaaagttagctataaa
gacgtagctggtgaattgctcaaagattggtga
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