Nicotiana tomentosiformis: 104113252
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Entry
104113252 CDS
T05025
Name
(RefSeq) DNA repair protein RAD16-like isoform X1
KO
K15083
DNA repair protein RAD16
Organism
nto
Nicotiana tomentosiformis
Brite
KEGG Orthology (KO) [BR:
nto00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nto03400
]
104113252
DNA repair and recombination proteins [BR:
nto03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
104113252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4_2
zf-RING_UBOX
zf-RING_5
ResIII
zf-C3HC4_3
Prok-RING_4
DEAD
zf-C3HC4
zf-RING_2
DUF6011
Motif
Other DBs
NCBI-GeneID:
104113252
NCBI-ProteinID:
XP_033516430
LinkDB
All DBs
Position
7:complement(16256090..16270684)
Genome browser
AA seq
808 aa
AA seq
DB search
MDPSIPEDQRNGNGHRYVKYAMNRLLVRLQVRKKERERKKKKRPALMWETWEEENSMCLL
ENYSDDLDLDNQNVLVSETAEPPSNLTLPLLRYQREWLAWSLKQEESATRGGILADEMGM
GKTVQAIALVLAKRQLQKTTSDSSILSSSPGTSQKFPAVKGTLVVCPVVGVMQWFSEIDH
CTTKGSNKILVYHGTDREKHMHKLAEYDFVITTYSTIEDDYSKYTMPSKQQSKNLKPLVE
MLDQKTVLKGGKGKTDSDPETDIRKRGRRKGMRHSTMTGKWSNNGSIDNSASSDEDVSRR
KSVLHSVKWDRIILDEAHYVKDARCNTARAVFALESSYKWALTGISLQNHMGELYSFVRF
LQVIPYAYYFCKDCDCRGLDYSFSTECPQCHHNRARHFLWWKKCIARPLRKIKYNGAGRD
AMVLLKHKILKNLLLKRTKKERAAELALPPKIITLRKDSLDDNEKDYYISLCEEAMSKMD
RYDRAGTQRNNLLAMFTRLQQAVDHPYLVEYSDTYYASWNTDAGSVEQSCCLCHDEVESP
VVTSCGHVFCKTCFLDKTGSMGEVSCPSCSKPLTDDSSTYNGKGDSNSKPTVKGFRSSSI
VNKIQLDDFRTSTKIEALREEIRFMVERDGSAKGIVFSQFASFLDLIQYSLQKSGIKCVQ
LVGSMSIAARDAAITRFIEDPDCRIFLMSFKAGGVALNLTVASHVFLMDSCLNPAIEQQA
QDRAHRIGQHKPVRCVLHFLYFLPLNVSYFCLLITRIVRFVIEDTIDERILQSQEKKKHF
QRMVGGSFEAWEKLSLEDWVFLFECEFV
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggatccttcaattccagaagatcaaaggaatggaaatggccatcgttatgtgaagtat
gcgatgaatcggttgttggtaaggttacaagttaggaaaaaggaacgtgagaggaaaaaa
aagaaaagaccagctttgatgtgggagacatgggaagaagaaaacagtatgtgccttctt
gaaaattattcagatgatttagacttggataatcagaatgtgttggtgtctgaaactgcc
gagccaccatccaatttgaccttgccactgctgaggtaccagagggagtggttggcttgg
tcattaaagcaagaagaatctgcaacaagaggaggtattcttgctgatgagatgggaatg
gggaagactgttcaagccatagcacttgtgcttgctaaacgccaattacagaaaacaact
agtgattccagtatattgtcatcttcacccggtacttcccagaaattcccagcagtcaaa
ggaactcttgttgtgtgtcctgtggttggtgtgatgcaatggtttagtgagattgatcat
tgcaccactaaaggaagcaacaaaattcttgtttatcatggcactgacagagagaaacat
atgcacaaattggcggaatatgattttgtcattactacctactccaccattgaggatgac
tatagcaagtatacgatgccgtcaaaacagcagagtaagaacttaaaacctctggtagaa
atgttggaccagaaaacagttcttaaaggaggcaaaggaaagactgacagtgacccagag
actgatatacggaaaagaggtcgcagaaagggcatgaggcatagtaccatgacaggaaaa
tggagcaacaatggttctattgataattcagccagttctgatgaagacgtgtccaggagg
aagtccgtgttacattcagtgaagtgggatcgcattattctggatgaggctcattatgta
aaagatgcacgctgcaacacggcaagagctgtttttgcgttggaatcttcttacaagtgg
gccttaactggtatatccctgcagaaccatatgggagaactgtactcatttgtccgtttc
ttacaagttattccttatgcttattacttttgcaaagattgtgattgcagaggacttgat
tatagcttctcaactgagtgcccacagtgccaccacaaccgtgcacgccattttctctgg
tggaagaaatgtatcgcaagacctttaagaaagattaaatacaatggggctggtagagat
gcgatggttttgttgaagcacaaaattctgaaaaacctattgctaaaacgtaccaaaaag
gagagagctgctgagcttgcacttcccccgaagattattactctgcgaaaagattctttg
gatgacaatgaaaaagactactacatatcactgtgcgaagaagccatgtcaaagatggat
agatatgatcgggctggaactcaaagaaataacttgcttgctatgttcacacgcctacag
caggcagttgatcatccttaccttgtggaatactctgacacatattatgctagttggaat
acagatgctggcagtgttgagcaatcatgttgcttatgtcacgatgaagtagaaagtcca
gtagttacttcttgtgggcatgtgttttgcaagacgtgttttttagacaaaactggaagt
atgggagaagtgtcatgcccttcgtgttctaaacccctaactgatgactccagtacatat
aatggtaagggagattcgaattctaaaccaactgtcaaagggtttagatcctcaagtata
gtgaacaaaatacagcttgatgatttccggacaagcactaaaatagaagctttgagggaa
gaaattaggttcatggttgaaagagatggttctgcaaaaggaatagttttcagccagttc
gcatcgtttttggatctaatacagtattctcttcagaaatcaggcatcaaatgtgttcag
ttagttggatccatgtctattgctgcaagagatgctgcaattaccagatttattgaggat
ccagattgcaggatatttcttatgagctttaaagctggaggtgttgccctcaatcttaca
gttgcatcacatgttttcttgatggattcctgcttgaatcctgctatagagcagcaagcc
caagatagagctcatcgaatagggcaacataaaccggtcaggtgtgttttgcatttcttg
tattttttgcccttgaatgtgtcttatttttgtcttctcattactaggattgtgagattt
gttatcgaggatacaattgacgagaggatcttacagtcacaagagaagaagaaacatttt
caaaggatggtcggtggttctttcgaggcctgggaaaaactatcattagaagattgggtg
ttcctgtttgagtgcgagtttgtttag
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integrated database retrieval system
