KEGG   Nocardia terpenica: CRH09_28645
Entry
CRH09_28645       CDS       T05168                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ntp  Nocardia terpenica
Pathway
ntp03030  DNA replication
ntp03410  Base excision repair
ntp03420  Nucleotide excision repair
ntp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ntp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CRH09_28645
   03410 Base excision repair
    CRH09_28645
   03420 Nucleotide excision repair
    CRH09_28645
   03430 Mismatch repair
    CRH09_28645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ntp03032]
    CRH09_28645
   03400 DNA repair and recombination proteins [BR:ntp03400]
    CRH09_28645
Enzymes [BR:ntp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CRH09_28645
DNA replication proteins [BR:ntp03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CRH09_28645
DNA repair and recombination proteins [BR:ntp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CRH09_28645
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CRH09_28645
   MMR (mismatch excision repair)
    DNA ligase
     CRH09_28645
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CRH09_28645
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase Nlig-Ia HHH_2 DNA_ligase_ZBD BRCT HHH_5 PTCB-BRCT HHH DUF8259 DUF8512
Other DBs
NCBI-ProteinID: ATL72176
LinkDB
Position
complement(6475938..6478043)
AA seq 701 aa
MSEPGIEIPPATADERTQWQRLAEEVREHQFRYYVRDAPVISDGEFDALFQQLLALEEAH
PDLRTPDSPTQQVGGGFATEFAPADHLERMLSLDNVFDEDELRTWVSRVEAEAGSDLHYV
CEVKIDGVALNLVYENGRLTRAATRGDGRTGEDVTLNARTIADIPERLTEHTEFPVPPLL
EVRGEVYFRLEDFENLNAAIVAEGKAPYANPRNTAAGSLRQKDPAVTARRRLRMICHGFG
RMEGFTPASQYEAYRALAAWGLPVSAHTVRVQGADAVIERVRYWGEHRHDIEHEIDGQVI
KVDEFVLQRRLGATSRAPRWAIAYKYPPEEATTKLLDIQVNVGRTGRVTPFAVMEPVTVA
GSTVAMATLHNAAEVKRKGVLIGDTVTIRKAGDVIPEVLGPIVDVRDGAEREFVMPTHCP
ECGTALAFEKEGDADIRCPNQQHCPAQLRERVFHVAGRGAFDIEALGYEAAIDLLRSGAI
GDEGDLFDLDEDKLLTTTLFANKDGSLSANGKRLLQNLESAKDRPLWRVLVALSIRHVGP
TAARALASEFGSMERIEAASGEELAATDGVGPTIAAAVEEWFTVDWHRAIVAKWEAAGVS
MEDERDASIARNLEGLSIVVTGSLQGFSRDEAKEAILVRGGKAAGSVSKKTAFVVIGDAP
GSKAAKAEELGVPILDEDGFRTLLAEGPEAVTPPAEEDTEE
NT seq 2106 nt   +upstreamnt  +downstreamnt
gtgagcgaacccggtatcgagatccccccggccaccgccgacgaacgaacgcagtggcag
cgcctggcggaagaggtgcgcgagcatcagttccgctactacgtgcgggacgcaccggtc
atctccgacggcgaattcgacgcgctgttccagcaactgctagcgctcgaggaggcccac
cccgacctgcgcaccccggattcacccacccagcaggtcggcggcggtttcgccacggaa
ttcgcccccgccgaccatctcgagcgcatgctgtcgctggacaacgtcttcgacgaggac
gaactgcgcacctgggtgagccgggtcgaggccgaggccgggtcggacctgcactacgtg
tgcgaggtcaagatcgacggcgtcgcgctcaacctggtgtacgagaacgggcggctgacc
cgcgccgccacccgcggcgacggccgcaccggcgaggacgtcaccctcaacgcccgcacc
atcgccgacatcccggagcgactcaccgagcacaccgaattccccgtcccaccgctgctc
gaagtgcgcggcgaggtctacttccggctcgaggacttcgagaacctcaatgccgccatc
gtcgcggaaggcaaggcgccctacgccaatccgcgcaataccgccgccggatcgctgcgc
cagaaggacccggccgtcaccgcgcgccgccgcctgcgcatgatctgccacggcttcggc
cgcatggagggcttcacccccgcctcgcagtacgaggcgtaccgcgcgctggccgcctgg
gggctgccggtgtccgcgcacaccgtgcgcgtgcagggcgcggacgcggtgatcgagcgg
gtccgctactggggcgagcaccgccacgacatcgagcacgagatcgacggccaggtgatc
aaggtcgacgaattcgtgctgcagcgccgcctcggcgccacctcccgcgcgccgcgctgg
gccatcgcttacaagtacccgcccgaggaggccaccaccaaactgctcgacatccaggtg
aatgtcggacgcaccggccgggtcacgccgttcgcggtgatggaaccggtcaccgtcgcg
ggatcgaccgtcgccatggccactctgcacaatgcggccgaggtcaagcgcaagggtgtg
ctcatcggcgacaccgtcaccatccgcaaggcgggcgacgtcattcccgaggtgctcggc
ccgatcgtcgacgtgcgcgacggcgccgagcgggaattcgtcatgcccacccactgcccg
gagtgcggcaccgcgctcgccttcgagaaggagggcgacgccgatatccgctgtcccaac
cagcagcactgcccggcgcagttgcgggagcgggtcttccacgtggccgggcgcggcgcg
ttcgatatcgaggcgctcggctacgaggccgcgatcgacctgctcaggtccggcgccatc
ggtgacgagggcgacctgttcgacctcgacgaggacaagctgctcaccaccacgctgttc
gccaacaaggacggcagcctgtccgccaacggcaagcggctgctacagaatctcgagtcc
gccaaggaccggccgctgtggcgggtgctggtggcgctgtccatccggcacgtcgggccg
acggccgcgcgggcgctggcctcggagttcggcagcatggagcgcatcgaggccgcctcc
ggcgaggaactggccgccaccgacggcgtcggcccgaccatcgccgccgcggtcgaggag
tggttcaccgtcgactggcatcgcgccatcgtggcgaagtgggaggcggccggggtcagc
atggaggacgagcgcgacgcctccatcgcccgcaacctcgagggcctgtccatcgtggtt
accggctcgctgcagggcttctcgcgcgacgaggccaaggaggccatcctcgtccgcggc
ggcaaggcggccggttcggtctcgaagaagaccgccttcgtggtcatcggcgacgccccc
ggctccaaggccgccaaggccgaggaactgggcgtgcccatcctcgacgaggacggcttc
cgcacgctcctcgcggaggggccggaggcggtgacgccgcccgccgaggaggacacggag
gaatag

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