Novibacillus thermophilus: B0W44_01970
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Entry
B0W44_01970 CDS
T04694
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ntr
Novibacillus thermophilus
Pathway
ntr03030
DNA replication
ntr03410
Base excision repair
ntr03420
Nucleotide excision repair
ntr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ntr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B0W44_01970 (ligA)
03410 Base excision repair
B0W44_01970 (ligA)
03420 Nucleotide excision repair
B0W44_01970 (ligA)
03430 Mismatch repair
B0W44_01970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ntr03032
]
B0W44_01970 (ligA)
03400 DNA repair and recombination proteins [BR:
ntr03400
]
B0W44_01970 (ligA)
Enzymes [BR:
ntr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B0W44_01970 (ligA)
DNA replication proteins [BR:
ntr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B0W44_01970 (ligA)
DNA repair and recombination proteins [BR:
ntr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B0W44_01970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B0W44_01970 (ligA)
MMR (mismatch excision repair)
DNA ligase
B0W44_01970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B0W44_01970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DBF4_BRCT
BRCT_2
5_3_exonuc
zf-IS66
HHH_8
HMBD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AQS54721
UniProt:
A0A1U9K3U6
LinkDB
All DBs
Position
366002..368020
Genome browser
AA seq
672 aa
AA seq
DB search
MNRSEAEKRIVQLRETIEEHNYRYHVLDDPVISDAEYDQLMRELERLEKAFPDLVTEDSP
TQRVGGEPLPYFEKVEHDTPMLSLGNAFDEQELRDFDRRVKRAAGVSGDMAYTCELKIDG
LAISLRYTNGRLTLGATRGDGTTGEDITQNLKTIPAIPLRLKEPVDIEVRGEAYLPKKEF
VRLNEAREKAGVSLFANPRNAAAGSLRQLDPKIAAERALSVFMYSVGDTTGHGIGTQWEM
LDYLVRLGFKVNPERRRVESIDGVIAYVESWRERRAELDYDIDGIVVKVDDFSIQEQLGT
TAKSPRWAIAYKFPAEEAVTIVRAIEVNVGRTGAVTPTAVLEPVTLAGTTVQRASLHNED
LIREKDIRIGDHVVVKKAGDIIPEVIKSIPERRTGEEIVYHMPDECPECGSELVHLEEEV
ALRCINPECPAQTREGIIHFVSRDAMNIDGLGEKVVTQLFNEGLVRSVADLYYLQRDELL
QLERMAEKSVDNLLAAIEKSKENSVEKLIFGLGIRFVGAKAARILAQEFGDLDTLEQADY
EQVLAVEGIGPKIADSIITYFQQPEVKQTLAKLRKAGVNFTYRGPRSEQAVSDSPFSGKT
VVLTGTLQNWSRKEASAKIEALGGNVTGSVSKRTDLVIAGEKAGSKLAKAQKLGIEVWDE
EKLMDVLKELEA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
gtgaacagatccgaagcagaaaaaaggatcgtccagctgcgagaaacgatcgaggagcac
aattaccgctaccacgtattagacgatcccgtcatttcggatgcggaatacgatcaactg
atgcgcgaattggagcgattggagaaggcttttcccgatctcgtaaccgaggactccccg
acccaacgggtcggcggtgagcctctcccgtacttcgagaaagtggagcacgacaccccg
atgctcagtctcggcaacgccttcgacgaacaggaactgcgggactttgaccggcgggtg
aagcgggcggccggggtaagcggcgacatggcctacacgtgcgaactgaaaattgacggg
ctggcaatttcacttcgatacacaaacggacggctgacactgggggctacgcgtggtgac
ggtacgacgggtgaagatataacccaaaacttaaagacgattccggccataccgctgcgc
ttgaaggaacctgtagacatcgaagtgcggggggaagcgtacttgccaaaaaaggagttc
gtccgcctgaacgaagcgcgggaaaaagcgggcgtatccctgttcgccaatccgcgtaac
gccgccgccggttcactgcgccaactggacccgaagattgcggccgaacgggccctcagt
gtgttcatgtacagtgtgggagatacgaccggacacggtatcggcacccaatgggaaatg
ctcgactatttggttcgcctcggatttaaagtcaaccccgaacggaggcgagtggagtcc
attgacggagtcatcgcgtacgtggaaagttggcgggaacggcgtgccgaactcgattac
gacatcgacggcattgtggtgaaagtggacgatttctcgatacaggaacagctggggacg
acggcgaagagtccgcgctgggccatcgcctacaagtttcctgcggaagaagcggtgacg
attgtccgagccattgaagtgaacgtcggtcggacaggggccgtgacaccgacggctgtg
ttggaaccggtgacgttggcggggacgactgtacagcgcgcgtctttgcacaacgaagac
ctcatccgggagaaagacatccgtatcggggaccacgtcgtcgtgaaaaaagcaggggat
atcattccggaagtgatcaaatcgatccccgaacggcggacaggcgaagaaatagtgtac
cacatgcccgatgaatgtccggaatgcggcagtgaactcgtccacctggaagaagaagta
gccctccggtgcatcaaccccgaatgtccggcccagacccgggaaggcattatccacttc
gtctcccgggatgcgatgaatatcgatggactgggagaaaaagtggtcacccaactgttt
aacgaaggccttgtccgcagcgtggccgatctgtactaccttcagcgggatgagctgtta
cagttggagcgcatggcagagaagtcggtagataatcttttggcggctatagagaaaagc
aaagaaaattcagtggagaaactgattttcggtctgggcatccgctttgtcggggctaag
gcggcccgcattctcgcccaggaattcggcgacctcgacacactagagcaggccgattac
gagcaagtgctggccgtggaaggcatcggcccgaagatcgccgacagcatcatcacgtat
tttcaacagccggaagtgaaacagacgttggcaaagttgcgtaaagccggtgtgaacttc
acatacagaggaccgcgttcggaacaggcggtgtcagacagtccgtttagcggaaagacc
gtcgtcctgaccggaactttgcaaaactggtcgcgcaaagaagcctccgccaaaatcgaa
gccctcggcggcaatgtcaccggcagcgtcagcaaacgaacagacctcgtcatcgccggg
gaaaaagctggttctaaattggccaaagcgcaaaaactggggattgaagtgtgggatgag
gaaaagttgatggacgtgttgaaggagttggaggcgtaa
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