Niallia taxi: NQZ71_00220
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Entry
NQZ71_00220 CDS
T09453
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ntx
Niallia taxi
Pathway
ntx03030
DNA replication
ntx03410
Base excision repair
ntx03420
Nucleotide excision repair
ntx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ntx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQZ71_00220 (ligA)
03410 Base excision repair
NQZ71_00220 (ligA)
03420 Nucleotide excision repair
NQZ71_00220 (ligA)
03430 Mismatch repair
NQZ71_00220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ntx03032
]
NQZ71_00220 (ligA)
03400 DNA repair and recombination proteins [BR:
ntx03400
]
NQZ71_00220 (ligA)
Enzymes [BR:
ntx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQZ71_00220 (ligA)
DNA replication proteins [BR:
ntx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQZ71_00220 (ligA)
DNA repair and recombination proteins [BR:
ntx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQZ71_00220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQZ71_00220 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQZ71_00220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQZ71_00220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
Mur_ligase_C
DnaG_cat_HB
Nlig-Ia
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
WOD62892
LinkDB
All DBs
Position
complement(47219..49225)
Genome browser
AA seq
668 aa
AA seq
DB search
MDLQAAEKRTKELHNLLNKYNYEYHVLDNPSVPDAEYDALLKELVDLEESFPALKTSDSP
SQRIGGEILDMFQKVQHHSPMLSLGNAFNEADLRDFDRKVRQAIGESFSYVCELKIDGLA
VSLRYVDGLFELGATRGDGTTGEDITANLRTIRSIPLRLNEQVSIEVRGEAFMPKKSFEA
LNKAKDENGEEPFANPRNAAAGSLRQLDPRIAASRNLDIFLYAIGDPGETGVRSHSQGLD
LLDDLGFKTNKERQRCASIEDVLQYVEGWQEKRPHLPYEIDGIVIKVDSLEQQDELGTTA
KSPRWAIAYKFPAEEVVTKLLNIELSVGRTGVLTPTALLEPVKVAGTTVKRASLHNEDLI
REKDIKIGDSVVVKKAGDIIPEVVNVLVERRTGEEVDFLMPTHCPECESELVRIEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGERVVSQLFQEKLIEDVADLYKLTYEQLISL
ERMGEKSVTNLLNAINASKSNSLERLLFGLGIRHVGSKAAKTIAMEFGNMDKLANATREE
LTAINEIGDKMADSIVAFFEQEEAAELIQELKDSGVNMEYTGARPVAAEESDSVFAGKTI
VLTGKLEQLSRNEAKEQIELLGGKITGSVSKKTDLVIAGEDAGSKLTKAEQLGIEIWDEE
KLLEELKG
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatctacaagcagcagaaaaaaggacaaaggaactgcataaccttttaaacaaatat
aattatgaatatcatgttcttgataatccttctgttccagatgcagaatacgatgcacta
ctaaaagagcttgttgatttggaagaaagcttccctgccttaaagactagtgactctcca
tcccaaaggattggaggggaaattttggacatgttccaaaaggtgcagcatcattcacca
atgctcagtcttgggaatgcttttaatgaagctgatttgcgggactttgatcggaaggtg
cgccaagcaatcggggaaagcttttcttatgtttgtgagctgaagatagatgggttggct
gtatctctgcgttatgtggacggtttatttgagcttggagcgacaagaggagatgggacg
acaggcgaagatataacggctaatctgcgaacaattcgttccataccccttcggttaaat
gaacaagtaagcattgaagtccgtggagaagcctttatgccgaagaaatcttttgaggct
cttaacaaggcaaaggatgaaaatggagaagaaccgtttgcaaatccaagaaatgcggct
gcaggctctttaagacagcttgatccaaggattgctgcttctcgtaatctcgatatattt
ctatatgcgattggagacccaggagaaacgggtgtccgctcacatagtcaaggccttgac
ttacttgatgaccttggctttaaaacaaataaagaaagacagcgctgtgcatcaattgag
gatgttttacagtatgtagaaggctggcaggaaaagcgtccacatcttccttatgagatt
gatggaattgtcattaaagtggatagtctggaacagcaagacgagcttggaactactgct
aaaagtccaagatgggcaattgcctataaattccctgctgaagaggttgttacaaagctt
cttaatatagaactaagtgttggccgaactggagtattgacgccaacagcattgcttgag
cctgttaaagtggcagggacgacagtcaaacgggcatccttgcataatgaagatcttata
agagagaaagacattaaaatcggtgacagtgtggtcgtaaaaaaagcaggcgatattatt
cctgaggttgtgaatgttcttgtggaacgcagaacgggtgaggaagttgacttcttaatg
ccaacacattgtccagaatgcgaaagtgaattggtgagaattgaaggtgaagttgcttta
cgctgtattaatccgaaatgtcctgcgcaaataagagagggattaattcactttgtttct
aggaatgcgatgaatattgacggacttggggaacgagttgtcagccagctgttccaggaa
aaactgattgaggatgttgctgatctttacaagcttacatatgaacagcttatctctctt
gaacgaatgggtgaaaagtcagttacgaatctgttaaatgcgataaatgcctctaagagc
aactccttggagagactgctgtttggtttaggaatccgtcatgtcggttcaaaagctgct
aagacaattgcaatggaatttggaaatatggataaattggcaaatgcaactagagaagaa
ttgacagctattaatgaaataggcgataagatggctgattccatcgttgctttctttgag
caggaagaagcggccgagcttattcaggaattaaaggattctggtgtgaacatggaatat
acgggtgcaagacctgttgccgcagaagagtcagacagtgtgtttgcaggcaaaacgatt
gtattgacaggtaagcttgaacagctttcccgaaatgaagcaaaggagcaaattgagctc
ttaggcggaaaaattactggaagtgtcagcaaaaaaacagatctcgttattgccggtgag
gatgcaggaagcaagctgacgaaagcagaacagcttgggattgagatatgggacgaggaa
aagctgttggaagaactaaaaggttaa
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