Nonlabens ulvanivorans: R1T42_06790
Help
Entry
R1T42_06790 CDS
T09493
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nul
Nonlabens ulvanivorans
Pathway
nul03030
DNA replication
nul03410
Base excision repair
nul03420
Nucleotide excision repair
nul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R1T42_06790 (ligA)
03410 Base excision repair
R1T42_06790 (ligA)
03420 Nucleotide excision repair
R1T42_06790 (ligA)
03430 Mismatch repair
R1T42_06790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nul03032
]
R1T42_06790 (ligA)
03400 DNA repair and recombination proteins [BR:
nul03400
]
R1T42_06790 (ligA)
Enzymes [BR:
nul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
R1T42_06790 (ligA)
DNA replication proteins [BR:
nul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R1T42_06790 (ligA)
DNA repair and recombination proteins [BR:
nul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
R1T42_06790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R1T42_06790 (ligA)
MMR (mismatch excision repair)
DNA ligase
R1T42_06790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
R1T42_06790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Auto_anti-p27
BRCT_2
HHH_8
Cdd1
TF_Zn_Ribbon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WOI24151
LinkDB
All DBs
Position
complement(1508138..1510192)
Genome browser
AA seq
684 aa
AA seq
DB search
MSPKEQIQSLRDELREHNYNYYVNDNPTISDFEFDKKLEQLKTLEAAHPEFYDATSPSVR
VGGEVTKNFNTVKHINRMYSLDNSYSIEDLRDWETRIKKIVDGEIQYTCELKYDGASISL
HYEYGKFVQAVTRGDGNQGDEVTANVRTIKSVPLQLKGNDVPEKFEIRGEIVLPWDGFHK
MNEERAEQGLDLYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQLAGENLPVKSQFDSLML
ARKWGFKAPQESRLVNSIEEVFEYINHWDVARKELPYETDGVVIKVNSLDQQDELGFTAK
APKWAMAYKFAAEQVSTRLEEITYQVGRTGSITPVANLEAVEISGTTVRRASLHNADQIE
KLDIRVGDEVYVEKGGEIIPKIVAVDLAKRPENSTPTVYATHCPECNTELVRNEGDAKHY
CPNDMACPPQVKGRIEHFISRKAMDIDGIGAETVGQLVDAGFINNYADLYDLTVEQVLPL
ERMAQKSAENMINGIEASKQVPFERVLFGLGIRYVGETIAKKLAKHYKNIDSLFNMPAEP
EKTSIDLFADVSSAADKKIEELTAVPEIGESIAQSLVEFIQNEDQMAIVERLKNAGLQFA
LSEEQLEGQTDKLSGKSFVISGVFEMSRNDLKKLVEDNGGKNSSSISSKTDYLIRGDKMG
PSKLEKAEKLGITMISEQEFLAMI
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgagtccaaaagaacaaatacaatccttgcgtgatgagttgcgcgagcacaattataat
tactacgttaacgataatcctaccatatcagactttgagtttgataagaaactggagcaa
ttaaaaacgctagaagctgctcatccagagttctatgacgcgaccagtccatctgtacgt
gtaggtggtgaggtcactaaaaatttcaataccgttaagcatatcaatcgcatgtactcg
ctagataattcttattccatagaggatttgcgcgattgggaaacgcgtatcaaaaaaata
gtagatggcgaaattcagtatacttgcgagcttaaatatgatggtgctagcataagtttg
cattatgaatacggaaagtttgttcaagctgtaactcgtggtgatggaaatcaaggtgat
gaggtcacggcaaatgtgcgtacgattaagtctgtgccgctacaattaaaaggaaacgat
gttcctgagaagtttgaaatacgtggtgagattgtattgccttgggatggatttcataaa
atgaatgaagaacgtgcagagcaaggactggatttatatcgcaatccacgtaatacggct
agtggtagcttgaaactacaggatagtgctgaggtggcaaaaagaccattagattgtttg
ctatatcaacttgctggtgaaaatctaccagtaaaaagtcagtttgattctttaatgctt
gcgcgaaaatggggttttaaagcacctcaagaaagtagattagtcaactccatagaagaa
gtatttgagtacatcaatcactgggatgtagctcgcaaagagctaccatatgaaaccgat
ggtgttgtgataaaagtgaattcgcttgatcaacaagatgagttaggctttactgccaaa
gctcctaaatgggcgatggcttataagtttgcggctgagcaagtatcgacgagactagag
gaaattacctatcaagtaggtcgtactggctctatcacaccagtagccaatctagaagct
gtagaaatatctggaactacggtaagacgtgcaagccttcacaatgcagatcagatagaa
aaactagatataagagtaggcgatgaggtatatgtagaaaaaggtggtgagatcattcct
aaaatagttgctgtagatttagctaaacgaccagaaaattccactcctacggtttatgct
acgcactgcccagaatgtaatacagagttagttcgtaacgaaggagatgcaaagcattac
tgtcctaacgacatggcctgtccaccacaagtgaaaggtaggattgagcattttatttct
cgcaaagcgatggatattgatgggataggagcagagactgtaggtcagttagtcgacgca
ggtttcatcaacaactatgcagatttgtacgatctaacggtggagcaggttttaccgcta
gaacgcatggcacaaaaaagtgccgagaatatgattaatggaatagaggctagtaagcaa
gtgccttttgagcgtgtgctgttcgggctagggattagatatgtaggcgaaacaatagct
aaaaaactagctaaacattataaaaatattgactcgttatttaatatgccagcagaacca
gaaaagacttctatcgatttgtttgctgatgtttcgagcgccgcagataagaaaatagaa
gaattaaccgctgttccagaaataggagaaagtattgctcaatctctagtggagttcatc
cagaatgaggatcaaatggcgatagtagaacgcttaaaaaatgctggtctacaatttgca
ttgagtgaagagcaattagaaggccagactgacaagttatctggtaaaagttttgtgatt
tcaggtgttttcgaaatgtctagaaatgatttaaagaagctggtagaggataacggtggt
aagaactctagttctatttctagtaagactgactatttgatccgtggtgataaaatggga
ccgtctaaacttgaaaaagcagagaaattgggtataacgatgattagcgagcaagagttt
cttgcaatgatttaa
DBGET
integrated database retrieval system
