Candidatus Nitrohelix vancouverensis: G3M78_08455
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Entry
G3M78_08455 CDS
T09852
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nva
Candidatus Nitrohelix vancouverensis
Pathway
nva03030
DNA replication
nva03410
Base excision repair
nva03420
Nucleotide excision repair
nva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3M78_08455 (ligA)
03410 Base excision repair
G3M78_08455 (ligA)
03420 Nucleotide excision repair
G3M78_08455 (ligA)
03430 Mismatch repair
G3M78_08455 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nva03032
]
G3M78_08455 (ligA)
03400 DNA repair and recombination proteins [BR:
nva03400
]
G3M78_08455 (ligA)
Enzymes [BR:
nva01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3M78_08455 (ligA)
DNA replication proteins [BR:
nva03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3M78_08455 (ligA)
DNA repair and recombination proteins [BR:
nva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3M78_08455 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3M78_08455 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3M78_08455 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3M78_08455 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
HHH
PTCB-BRCT
HHH_8
5_3_exonuc
CNDH2_C
Zn_Ribbon_YjdM
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QPJ65419
UniProt:
A0A7T0G3J3
LinkDB
All DBs
Position
1841522..1843558
Genome browser
AA seq
678 aa
AA seq
DB search
MMSDSDKENIERLRDEILRHNQLYYNEDRPEISDREYDTLLERLKELENAHPEWASPSSP
TRQVGGKAAEKFPPVVHKSPMLSLDNTYNIEELRAFHQRVAKNLGAGASFEYLVELKFDG
LGVSLTYKDGEFVQGATRGDGKVGEDITANLKTIPSIPSRMNDNGAPAPALLEVRGEVFM
SRAEFEALNRQREEAGDPPFANPRNAAAGSLRLLDASVTRSRKLDIFVYNLGHLENGPTG
SDAFPFATHSELQQQLKDWGFQLNPNRYVCKTYEEILPRIEEWRDKKKTLDYEVDGLVIK
VNALDQQRRLGSTSKYPRWATAYKYEPEQAETQILEIVCQVGRTGAITPVANLEPVSLSG
STVSRATLHNEDEIKRKDIRVGDRVAIEKAGEIIPKVIRVITTPGQSRGEPFEMPRQCPE
CQSELQRLEGEAVWRCPNSVCPAQLRERLKHFASRNAMDIEHMGPAVIEQLTLQGQVRHF
SDIYQLKRDELVALERMAEKSADNLLQSIEKSKSAGLARLMFGLGVRHVGQRAAATLAQT
YQSIDALMQAGREELESVMEIGPAMAQSIVEFFEAPANQEEIRLLKERGVKTTLIETAGA
SDQLKGKQFVLTGGLETLTRDQARDKILQLGGRVTSSVSGKTDFVVAGADPGSKLDKANK
LGVTVLDEERFLKLIEGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcagattcagataaagaaaatatagagcgtttgcgcgacgaaattctgcgtcac
aaccagctctattataatgaagaccgaccggaaatttctgatcgcgaatacgataccctg
ctggagcgcctgaaagaacttgaaaatgcgcacccggaatgggccagtccgtcttccccc
acgcgccaggtaggcggtaaggcggctgaaaaattccctcccgtcgttcacaagtcgccc
atgctgagcctcgacaatacttataatatagaggagcttagagcttttcatcagagggtc
gccaaaaacctgggcgcgggagcgtctttcgaatatctggtggaattgaaattcgacggt
ctgggcgtttcgctcacctataaggatggggaattcgttcagggcgcgacgcgcggcgac
ggcaaggtgggagaagacatcaccgccaatctgaaaaccattccttcaattccttctcgc
atgaatgataacggggcgccagcgcctgcactgctggaggttcgcggtgaagtgttcatg
agccgcgccgagtttgaagcgctgaatcgacagcgtgaagaagctggcgaccctcccttc
gccaatccccggaacgcggcggcgggttccctgcgtttattggacgcttccgtaacgcga
tcgcgcaaactggatatcttcgtttataacctgggacatttggagaacggcccgacgggt
tcagacgcatttccatttgcgacgcacagcgaattgcaacagcaattgaaggactgggga
ttccagctcaatcccaaccgatacgtttgcaagacttatgaagaaattctgccgcgcatt
gaagaatggcgggataaaaagaaaacgctggattacgaggtcgacggtctggtcatcaaa
gtgaacgctctcgatcagcagaggcggctgggaagcaccagcaaatacccgcgctgggcg
acggcctataaatacgagccggaacaggcggagacgcagattctggagatcgtctgtcag
gtggggcgaacgggagcgatcacgccggtcgccaatctggaaccggtgtctctttcaggt
tccaccgtcagccgggcgacgcttcacaatgaagatgaaatcaagcgcaaggacattcgc
gttggcgatcgggtggctattgaaaaagcgggagagatcatccccaaggtcatccgcgtg
ataacgacgccagggcagagccgaggggagccgtttgagatgccccgacaatgcccggag
tgtcaatccgagcttcaacgtctggaaggcgaggcggtctggcgttgtccgaacagcgtg
tgcccggcgcagttgcgagagcgtctgaaacattttgcttcgcgcaatgcgatggatatt
gagcatatgggaccggcggtgatcgaacagctgaccctgcaaggtcaggtgcgtcatttc
tctgatatctaccagttgaagcgcgatgaactggtggcgctggagagaatggcggagaaa
tcagcggacaatttattgcagtcgatagagaaaagtaaatctgccggtctggcgcgtttg
atgtttggtttgggagtccgtcatgtcggccaacgcgccgccgcgacgctggcgcagacc
tatcagagcatcgacgcattgatgcaggcggggcgcgaggaactggaaagcgttatggaa
atcggcccggcgatggctcagagtattgtcgagttttttgaagctccggcgaatcaggaa
gagatccgtctgttgaaagagcggggagtcaaaaccactctcatcgaaacggcgggcgcg
agcgatcagttgaagggcaaacagtttgtgctgacgggaggactggagacgctgacgcgc
gatcaggctcgcgacaaaatcctgcaattgggcggtcgggtgacttcgtccgtatccggg
aaaaccgattttgtggtggcgggcgccgaccccggctccaagctcgacaaggcgaacaag
ctgggcgtgacggttttagatgaagagcgttttttgaaattgattgaaggaaactga
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