Nematostella vectensis (starlet sea anemone): 5516005
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Entry
5516005 CDS
T01037
Name
(RefSeq) probable E3 ubiquitin ligase complex SCF subunit sconB isoform X1
KO
K10260
F-box and WD-40 domain protein 7
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
5516005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nve04131
]
5516005
04121 Ubiquitin system [BR:
nve04121
]
5516005
Membrane trafficking [BR:
nve04131
]
Autophagy
Mitophagy
Other mitophagy associated proteins
5516005
Ubiquitin system [BR:
nve04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
5516005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_IFT122_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Gbeta
DSE1_N
Beta-prop_SCAP
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_C
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
ASA1
Beta-prop_EIPR1
Beta-prop_SPT8
WDR90_beta-prop_4th
F-box-like
NBCH_WD40
WD40_MABP1-WDR62_1st
CFAP251_N
Beta-prop_VPS8
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_ACSF4
Beta-prop_Aladin
Beta-prop_DCAF12
F-box
WD40_like
Beta-prop_NOL10_N
Beta-prop_IP5PC_F
Vts1
DUF4508
Beta-prop_WDR11_2nd
WD_LRWD1
Beta-prop_pof12
Ge1_WD40
TRM82_WD
Methyltransf_36
DUF2502
POTRA1_3_Toc75
Motif
Other DBs
NCBI-GeneID:
5516005
NCBI-ProteinID:
XP_032241717
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MADGDGREKSIKFLPTIKHNRTIQASKDHDMKFKTFSKPLMLPSIELMYADLDQVSTLFS
KKQLNKKVCEWFSSWRPWQKRILLCSLTEKCTKPQLQALFTTLQPVFHRDFIAKLRGSYP
TALIQPKLVHTISTVMNEAELMSLNLDTDSSASKDGTKLESFTEDIQQSNSYISDNLKEL
LKPDHIATSSNSDDNLQTSFNEVTMEEGVEYGKVLTTERVTIGIPSTAVTGLDQCRLHEH
APKFSRKVSTPNFFSPCHDSGRLGFMKSINRTSDIARGNGWDPLTFKHSKWWDGHRGARL
LKPRRSKLSNFFKAQLNQIKKWLEEWPSYERVDMLSEIVKCCDPECLNFFALCLSQRLRE
ETGLNCVPDQTLLKIFSLLDVRSLCNSSQVCRRWRYLGQEGTLWRGRIDNLGKSEGIVNL
TEKIEALSNDQYVDWKQAYREVYQHYHDLANAKVAIPIQEPKETKKEKKVRIDVHKEKNK
EPEDNTCNLRTSSRADPVSSIQAIEISVPQKVDVVVTKSLEDVGPAQSPTTTDQRSQIDE
FESRPEDQNDLTGGNLKMLARGLRALMRENDADKEEELALDVRPALVQAANVLKESDHPD
RSRFRYLSLAVQGVLTIKRVRRLQGHMDVVLCLQFDRRRVVTGSSDRTIRMWDVRSGRSI
RKMKGHKGGVRCLQFDNERIISGSWDMTIMVWHIVKFTRLHVLYGHKGCVSCLRFDENTL
VSGSHDSTIRVWDMRTWECVLVLQGHEGAVSCLEFDAPFVLSGSADKTIKLWNVESGDCL
NTLRGHADAVTSVKVIGELILSGSADGMILFWDLDSGHCEAAIQAHEGPVHSLSYANDHF
FSAGGDNMIKEWDVGTCTCLRTLQGHRGPVQDVMVAGRRIVTCSSDGSVRIWDLAGNTPE
QGQSKSVSVGENTIETKTIKKHPDSEFF
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgatggccgtgagaagagcatcaaattcttacctacgatcaaacataac
aggaccatccaagctagcaaagatcacgatatgaaatttaagacattttcaaagccactt
atgctgccgagtatagagcttatgtacgccgatcttgaccaagttagtactttattctcg
aagaaacagctaaacaaaaaagtttgtgagtggttttcaagctggaggccttggcagaag
cgcattctcttgtgtagcttgacggagaagtgcactaagccgcagctacaagccttgttt
actacactacaacccgtattccacagggattttatagcaaagctcagagggtcttatcca
acagccctcattcaaccgaagctagtacatactatttcaacagtgatgaacgaagcagag
cttatgtcgttaaaccttgatacggattctagcgcatctaaagacggcactaaactagag
agtttcacagaggatattcaacaatcaaattcttacattagcgataatctgaaggaattg
ttgaagcctgatcacattgcaacctcaagcaactcagatgataatttacaaacaagtttt
aatgaggtgacaatggaggagggggttgaatatggaaaggtattaacaacagaaagagtg
actattggcatcccatcaactgcagtcacaggcctggatcaatgccgcttgcatgaacat
gcgccaaaattttctcgcaaagtcagtactccaaattttttctcaccatgccatgattca
ggacggcttggatttatgaagagtatcaatagaactagtgatatagccaggggaaatggg
tgggatcctttgacttttaagcactccaaatggtgggatggccatagaggagcacgactg
cttaagccgaggagaagcaagctgtcaaacttcttcaaggcacagttgaaccaaataaaa
aaatggctagaggagtggccgtcttatgagcgtgtggacatgctttctgagattgtcaag
tgctgtgatccagaatgtttgaactttttcgctctctgcctcagtcaaagattgagagag
gagactggattgaactgtgttcctgatcagacattgctaaagatattttcattattggat
gtgagaagtctttgtaatagttcacaggtgtgtagaagatggagatatcttggccaagaa
ggaactctgtggcgtggtagaattgataacctagggaaatcagaggggatagtgaacctt
accgaaaaaattgaagccctcagcaatgaccagtatgtagactggaagcaggcataccgt
gaggtttaccagcattaccatgatctggccaatgccaaggttgccatacccatacaagaa
ccaaaagagaccaagaaagagaagaaagttagaattgatgtgcacaaggaaaaaaataaa
gaacctgaggataacacttgcaatttgcgtactagcagcagggcagatccagtgagcagc
attcaagctattgagatcagtgttcctcagaaagttgatgtggtagtcacaaagtctcta
gaagatgttggccctgcacagtcacccacgactactgaccagaggtcccaaatagatgag
tttgagtctcgacctgaggaccagaatgacctgacagggggcaacctcaagatgctcgct
agagggttgagggctctcatgcgagagaatgacgcagataaggaggaagagttggcactg
gatgtcagaccagctcttgtgcaagcagctaatgtacttaaggaatctgaccatcctgac
cgttctcgctttcgctacctctcccttgctgtgcaaggcgttcttaccatcaaacgtgtc
agacgacttcagggccacatggatgtcgtgctgtgtctacaattcgaccgcagaagggtg
gtcacgggttcgtctgaccgcactattcgcatgtgggacgtcaggagtgggcgaagtatc
cgcaagatgaaaggccataagggcggtgtacgttgccttcagttcgataacgagcgtatc
atcagtgggtcgtgggacatgacgatcatggtgtggcacatcgtcaagtttacacgtctc
cacgtgctctacggacacaagggatgcgtctcttgccttcgctttgatgaaaacacgctg
gtatccggttcacatgactccaccatccgcgtgtgggatatgcgcacgtgggaatgcgtc
cttgtgttacagggacatgaaggtgctgtgtcgtgcttggagtttgatgcgccgtttgtg
ttgagtgggtcagctgataagaccatcaagttgtggaatgtggagtcgggggactgtctg
aacacactaagaggtcatgcagatgcggtcacctcagttaaggtgataggggagctcatc
ctaagtggatccgcagatgggatgatcctgttttgggacttggattctggacattgcgag
gctgctatacaggctcacgaggggccggtccactcactctcttacgccaatgatcatttc
ttctctgctggaggggataacatgatcaaggagtgggatgtcggcacgtgtacatgcctt
cgtacgctacagggacacaggggacccgtgcaggatgtcatggtcgctggtcgccgaata
gtaacgtgttccagtgatggcagcgtgaggatctgggacctagcagggaacactccagag
cagggccagtctaagagtgtcagtgtgggcgagaatacaattgagaccaagaccatcaag
aagcacccagactcagaattcttctga
DBGET
integrated database retrieval system
