Nematostella vectensis (starlet sea anemone): 5516963
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Entry
5516963 CDS
T01037
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
nve
Nematostella vectensis (starlet sea anemone)
Pathway
nve03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nve00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
5516963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nve03019
]
5516963
Messenger RNA biogenesis [BR:
nve03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
5516963
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
TDP-43_N
RRM_PARP14_3
Nup35_RRM_2
RRM_7
RRM_3
SET1_RBD
RRM_10
Motif
Other DBs
NCBI-GeneID:
5516963
NCBI-ProteinID:
XP_032242938
LinkDB
All DBs
Position
Unknown
AA seq
351 aa
AA seq
DB search
MTQIYVRVVDDETCPDQAIEIEAEEDGTLLLSNVNGQFPGACGLRYRNPETQAFRGVRLV
EDVLYPPFEDGWGDTLFLVVPSKAADSASKRKIEESPIGKEPETKITKVEGVDVGDLIVL
GLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVLSTSHRIQ
GRLCEVRLPRPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPKPFRHFGFV
TFASGELAKKVLSQNHRISGSLLNITFAEPKSTAKGMGSGYAWGGGASEMWTGSPGWSGR
QGGANMGYSPANATTAYNSMLSMMNQAGMMSPSTNKTWSRSNLNTTPPQHR
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaatttacgtgcgcgttgtcgacgacgagacttgtccagaccaagcgatcgag
attgaagccgaggaagatggcactcttctgctttcgaacgtcaacggtcaattccctgga
gcctgtggtctgaggtacaggaacccagaaacacaggcttttcgtggcgtgagactagtg
gaagacgtcttgtatccgccctttgaggacggatggggcgacacgctgtttctcgtggtg
cctagtaaagcggctgatagtgcaagcaaacgtaaaatagaagaatcaccaattggcaag
gagccagagacaaaaataaccaaagtagagggagtagatgttggtgatcttatcgtcctt
ggtttaccttatgcaacaactgaaagtgagatgaaggaatatttcacccgatttggagaa
attgacttttgtgaggtgaagctggacccaaacaccagaagatcaagaggatttggtttt
gtgaggttcaagaaagatgaggatgctaaaaatgtgttgtctacttctcatcgaatccag
ggtcggctatgtgaagtcagattaccaaggccaaaggaagagctgaatgtgccaaagaag
ctatttgttggccggcttccagagagtaccacagaaaagaccctgatggaatattttgcc
cagtttggagaagtcacagatgtctatattcccaaacccttccggcactttggttttgtc
acatttgcttctggtgagcttgctaaaaaagtattatcccaaaaccatcgtataagtggc
agcctgttgaatatcacattcgctgagccgaaatccactgcaaagggaatggggtctggg
tacgcttggggaggtggggctagtgagatgtggacggggagtccagggtggagtggacgt
cagggtggggctaacatggggtacagccctgcaaatgctaccactgcgtacaacagtatg
ttgagtatgatgaaccaggctggcatgatgagtcccagcacaaataagacatggtcacga
tccaatctcaatactacgccaccacaacaccggtga
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